View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16010_high_2 (Length: 521)
Name: NF16010_high_2
Description: NF16010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16010_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 16 - 495
Target Start/End: Complemental strand, 413946 - 413467
Alignment:
| Q |
16 |
gccattgcagttagtttgaggctaaaggacggggatgaacatccagcccttgaaatacacttcctagtattctcattacttgtttcatcaaacttttttg |
115 |
Q |
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| T |
413946 |
gccattgcagttagtttgaggctaaaggacggggatgaacatccagcccttgaaatacacttcctagtattcttattacttatttcatcaaactttttcg |
413847 |
T |
|
| Q |
116 |
aggcttgaagttcccctgccaatgcctcctgctcaagagggtcactttctgcatcaaaattattttgttcagccatttgatttgaaccattggacaatga |
215 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
413846 |
aggcttgaatttcccctgccaatgcctcctgctcaagagggtcactttctgtttcaaaattattttgttcagccatttgatttgaaccattggacaatga |
413747 |
T |
|
| Q |
216 |
catttcagcctcacctagttcctccaccttcactggtatagctaccattgaattttccacattttcagcatcatgtcccaaatctggttccactgtgaga |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
413746 |
catttcagcctcacctagttcctccaccttcactggtatagctaccattgaattttccacattttcagcatcatgtcccaaatctggttccagtgtgaga |
413647 |
T |
|
| Q |
316 |
ggatgagaaactgctactaggcatcttgaacaggattgtacttgatcaaaacctgctccttgaacttgatatgcctgcaccaaatctcatattaaaaatt |
415 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
413646 |
ggatgagaaactgctactaggtatcttgaacaggattgtacttgatcaaaacctgctccttgaacttgatatgcctgcaccaaatctcatattaaaaatt |
413547 |
T |
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| Q |
416 |
ccatatatgcatatagttactctctctacaatgatataaaactataactcatagattttgatgaattttggcagaacatt |
495 |
Q |
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| T |
413546 |
ccatatatgcatatagttactctctctacaatgatataaaactataactcatagattttgatgaattttggcagaacatt |
413467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 9e-59; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 17 - 401
Target Start/End: Original strand, 37202906 - 37203281
Alignment:
| Q |
17 |
ccattgcagttagtttgaggctaaaggacggggatgaacatccagcccttgaaatacacttcctagtattctcattacttgtttcatcaaacttttttga |
116 |
Q |
| |
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||||| |||||||||| || ||||| || ||||| |||||||| |||||||||||||||||| | || ||| ||| |||||| | | ||| |
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| T |
37202906 |
ccatttcagttagttttagactaaaagatggggacgaacatccttcccttgaaatacacttccga---------tttgttgcttcctcaaacctatgtga |
37202996 |
T |
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| Q |
117 |
ggcttgaagttcccctgccaatgcctcctgctcaagagggtcactttctgcatcaaaattattttgttcagccatttgatttgaaccattggacaatgac |
216 |
Q |
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|||||||| |||||||||||||| ||||||||||||||| |||||||||| ||||| ||||||||||||| |||||||||||| | |||||||||| |
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| T |
37202997 |
ggcttgaatttcccctgccaatggctcctgctcaagaggtacactttctgcttcaaatgtattttgttcagctatttgatttgaatgactggacaatgaa |
37203096 |
T |
|
| Q |
217 |
atttcagcctcacctagttcctccaccttcactggtatagctaccattgaattttccacattttcagca---tcatgtcccaaatctggttccactgtga |
313 |
Q |
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|||||||||||||||| | || ||||||| |||| || |||| ||||||||||| |||| ||||||| |||| | |||| |||||||||||| ||| |
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| T |
37203097 |
atttcagcctcacctaatacccccacctt---tggtgtacctactattgaattttcaacatcttcagcatcttcattttccaactctggttccactatga |
37203193 |
T |
|
| Q |
314 |
gaggatgagaaactgctactaggcatcttgaacaggattgtacttgatcaaaacctgctccttgaacttgatatgcctgcaccaaatc |
401 |
Q |
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||||||| ||||| ||||||| ||||||| ||||| |||||||||||| ||| || || ||||||||||||||||||||||||| |
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| T |
37203194 |
caggatgaagaactgatactaggtatcttgatggggattctacttgatcaaacccttcttctggaacttgatatgcctgcaccaaatc |
37203281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 185 - 406
Target Start/End: Original strand, 37184054 - 37184278
Alignment:
| Q |
185 |
cagccatttgatttgaaccattggacaatgacatttcagcctcacctagttcctccaccttcactggtatagctaccattgaattttccacattttcagc |
284 |
Q |
| |
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||||||||| ||||||| || ||| |||||||||||||||||||||| ||| ||| ||| | |||||| || | |||||||||| ||||||||||| |
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| T |
37184054 |
cagccattttatttgaattatgggagaatgacatttcagcctcacctaattctcccatattctcaggtatacctcctgttgaattttcaacattttcagc |
37184153 |
T |
|
| Q |
285 |
atc---atgtcccaaatctggttccactgtgagaggatgagaaactgctactaggcatcttgaacaggattgtacttgatcaaaacctgctccttgaact |
381 |
Q |
| |
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|| ||| |||| |||||||||| ||||||||||| | |||| ||||||| ||||||| ||||| |||||||||| ||||| || || ||||| |
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| T |
37184154 |
ctctttatgctccaactctggttccattgtgagaggataaacaacttgtactaggtatcttgacatggattctacttgatcagaaccttcttctggaact |
37184253 |
T |
|
| Q |
382 |
tgatatgcctgcaccaaatctcata |
406 |
Q |
| |
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|||| ||||| |||||||||||||| |
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| T |
37184254 |
tgatttgcctacaccaaatctcata |
37184278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 185 - 406
Target Start/End: Original strand, 37195186 - 37195410
Alignment:
| Q |
185 |
cagccatttgatttgaaccattggacaatgacatttcagcctcacctagttcctccaccttcactggtatagctaccattgaattttccacattttcagc |
284 |
Q |
| |
|
||||||||| ||||||| || ||| |||||||||||||||||||||| ||| ||| ||| | |||||| || | |||||||||| ||||||||||| |
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| T |
37195186 |
cagccattttatttgaattatgggagaatgacatttcagcctcacctaattctcccatattctcaggtatacctcctgttgaattttcaacattttcagc |
37195285 |
T |
|
| Q |
285 |
atc---atgtcccaaatctggttccactgtgagaggatgagaaactgctactaggcatcttgaacaggattgtacttgatcaaaacctgctccttgaact |
381 |
Q |
| |
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|| ||| |||| |||||||||| ||||||||||| | |||| ||||||| ||||||| ||||| |||||||||| ||||| || || ||||| |
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| T |
37195286 |
ctctttatgctccaactctggttccattgtgagaggataaacaacttgtactaggtatcttgacatggattctacttgatcagaaccttcttctggaact |
37195385 |
T |
|
| Q |
382 |
tgatatgcctgcaccaaatctcata |
406 |
Q |
| |
|
|||| ||||| |||||||||||||| |
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| T |
37195386 |
tgatttgcctacaccaaatctcata |
37195410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 37212282 - 37212350
Alignment:
| Q |
24 |
agttagtttgaggctaaaggacggggatgaacatccagcccttgaaatacacttcctagtattctcatt |
92 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||||||||||||||| || ||||||||| |
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| T |
37212282 |
agttagtttgaggctaaaggatggggatgaacatccagtccttgaaatacacttcatatgattctcatt |
37212350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 37183841 - 37183896
Alignment:
| Q |
23 |
cagttagtttgaggctaaaggacggggatgaacatccagcccttgaaatacacttc |
78 |
Q |
| |
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||||||||||||||||||| || |||||| ||||||||||||||||||| ||||| |
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|
| T |
37183841 |
cagttagtttgaggctaaaagatggggatagacatccagcccttgaaatagacttc |
37183896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 37194973 - 37195028
Alignment:
| Q |
23 |
cagttagtttgaggctaaaggacggggatgaacatccagcccttgaaatacacttc |
78 |
Q |
| |
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||||||||||||||||||| || |||||| ||||||||||||||||||| ||||| |
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| T |
37194973 |
cagttagtttgaggctaaaagatggggatagacatccagcccttgaaatagacttc |
37195028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 404
Target Start/End: Complemental strand, 5364818 - 5364706
Alignment:
| Q |
292 |
cccaaatctggttccactgtgagaggatgagaaactgctactaggcatcttgaacaggattgtacttgatcaaaacctgctccttgaacttgatatgcct |
391 |
Q |
| |
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||||||| ||||| || |||||||||||||| |||| |||| || |||||| ||||||||||||||| ||||| | || |||||||||||||| |
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| T |
5364818 |
cccaaatttggttacaatgtgagaggatgagcaacttgtactggggctcttgatggcgattgtacttgatcacaaccttccttttcaacttgatatgcct |
5364719 |
T |
|
| Q |
392 |
gcaccaaatctca |
404 |
Q |
| |
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|| ||||||||| |
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|
| T |
5364718 |
acatcaaatctca |
5364706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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