View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16010_high_27 (Length: 207)

Name: NF16010_high_27
Description: NF16010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16010_high_27
NF16010_high_27
[»] chr4 (2 HSPs)
chr4 (19-207)||(55336196-55336384)
chr4 (40-200)||(55330779-55330939)
[»] chr2 (10 HSPs)
chr2 (49-207)||(8431120-8431278)
chr2 (44-198)||(8375876-8376030)
chr2 (65-198)||(8439094-8439227)
chr2 (44-207)||(8411976-8412139)
chr2 (44-207)||(8434074-8434237)
chr2 (65-207)||(8395550-8395692)
chr2 (65-207)||(8405880-8406022)
chr2 (62-206)||(8417212-8417356)
chr2 (103-192)||(8403959-8404048)
chr2 (68-184)||(8417081-8417197)


Alignment Details
Target: chr4 (Bit Score: 181; Significance: 5e-98; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 55336196 - 55336384
Alignment:
Q  19 agctgaccaaaatccttcgtcgtttcctacaaatgcagaacctattgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttc 118  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55336196 agctgaccaaaatccgtcgtcgtttcctacaaatgcagaacctattgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttc 55336295  T
Q  119 aatgctatatttccaagtctctcatagtcttcaatgtctttactctttacaacttcaataacttccctcatttccatttctagttcttc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  55336296 aatgctatatttccaagtctctcatagtcttcaatgtctttactctttacaacttcaataacttccctcatttccatttctaattcttc 55336384  T

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Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 40 - 200
Target Start/End: Original strand, 55330779 - 55330939
Alignment:
Q  40 gtttcctacaaatgcagaacctattgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctc 139  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||  |||| | |||||| |||| ||| ||||||||||||||||||||     
T  55330779 gtttcctacaaatgcagaacctatagctgcaattccagtgagtaatggaccagcagttgctaaactcttattaacctttaatgctatatttccaagtctt 55330878  T
Q  140 tcatagtcttcaatgtctttactctttacaacttcaataacttccctcatttccatttcta 200  Q
    ||||| |||||||| |||||  | || ||||||||||||||||| |||| |||| ||||||    
T  55330879 tcataatcttcaatatctttcattttcacaacttcaataacttctctcaattccttttcta 55330939  T

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Target: chr2 (Bit Score: 79; Significance: 4e-37; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 49 - 207
Target Start/End: Original strand, 8431120 - 8431278
Alignment:
Q  49 aaatgcagaacctattgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtct 148  Q
    ||||| ||| ||||| ||||||||||| | ||||||||| ||||| ||||||| ||||||||| | |||||||||||| ||||||||||| ||||| |||    
T  8431120 aaatgtagatcctatagctgcaattcctgagagtaatggccctgcaattgccaaactcttgtttaccttcaatgctatgtttccaagtctatcataatct 8431219  T
Q  149 tcaatgtctttactctttacaacttcaataacttccctcatttccatttctagttcttc 207  Q
    |||| |||||| |||||||  ||||||| ||| ||||||||||||||||||| ||||||    
T  8431220 tcaacgtcttttctctttatcacttcaacaacatccctcatttccatttctaattcttc 8431278  T

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Target: chr2; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 44 - 198
Target Start/End: Complemental strand, 8376030 - 8375876
Alignment:
Q  44 cctacaaatgcagaacctattgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcat 143  Q
    ||||||||||  || || || ||||||||||| ||||| ||||| ||||| ||||||| ||||||||| | |||||||||||| ||||||||||| ||||    
T  8376030 cctacaaatgtcgatccaatagctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttaccttcaatgctatgtttccaagtctgtcat 8375931  T
Q  144 agtcttcaatgtctttactctttacaacttcaataacttccctcatttccatttc 198  Q
    | ||||||  |||||| |||||||  ||||||| |||||||||||||||||||||    
T  8375930 aatcttcagcgtcttttctctttatcacttcaacaacttccctcatttccatttc 8375876  T

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Target: chr2; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 65 - 198
Target Start/End: Original strand, 8439094 - 8439227
Alignment:
Q  65 gctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactct 164  Q
    ||||||||||| ||||| ||||| ||||| ||||||| ||||||||| | |||||||||||| ||||||||||| ||||| ||||||  |||||| ||||    
T  8439094 gctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttaccttcaatgctatgtttccaagtctgtcataatcttcagcgtcttttctct 8439193  T
Q  165 ttacaacttcaataacttccctcatttccatttc 198  Q
    |||  ||||||| |||||||||||||||||||||    
T  8439194 ttatcacttcaacaacttccctcatttccatttc 8439227  T

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Target: chr2; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 44 - 207
Target Start/End: Original strand, 8411976 - 8412139
Alignment:
Q  44 cctacaaatgcagaacctattgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcat 143  Q
    |||||||||| ||| || |||||||||||||| ||||||||||| ||||| ||||||| ||||||||| | |||||| ||||| ||||||||||| ||||    
T  8411976 cctacaaatgtagatccaattgctgcaattcctgtgagtaatggccctgcaattgccaaactcttgtttaccttcaacgctatgtttccaagtctgtcat 8412075  T
Q  144 agtcttcaatgtctttactctttacaacttcaataacttccctcatttccatttctagttcttc 207  Q
    | ||||||   ||||| ||||| |  ||||||   ||||||  |||||||||||||| ||||||    
T  8412076 aatcttcagaatcttttctcttgatcacttcagcgacttcctgcatttccatttctaattcttc 8412139  T

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Target: chr2; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 44 - 207
Target Start/End: Original strand, 8434074 - 8434237
Alignment:
Q  44 cctacaaatgcagaacctattgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcat 143  Q
    |||||||||| ||| || |||||||||||||| ||||||||||| ||||| ||||||| ||||||||| | |||||| ||||| ||||||||||| ||||    
T  8434074 cctacaaatgtagatccaattgctgcaattcctgtgagtaatggccctgcaattgccaaactcttgtttaccttcaacgctatgtttccaagtctgtcat 8434173  T
Q  144 agtcttcaatgtctttactctttacaacttcaataacttccctcatttccatttctagttcttc 207  Q
    | ||||||   ||||| ||||| |  ||||||   ||||||  |||||||||||||| ||||||    
T  8434174 aatcttcagaatcttttctcttgatcacttcagcgacttcctgcatttccatttctaattcttc 8434237  T

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Target: chr2; HSP #6
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 65 - 207
Target Start/End: Complemental strand, 8395692 - 8395550
Alignment:
Q  65 gctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactct 164  Q
    ||||||||||| ||||| ||||| ||||| ||||||| ||||||||| | |||||| ||||| ||||||||||| ||||| ||||||  |||||| |  |    
T  8395692 gctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttaccttcaaagctatgtttccaagtctgtcataatcttcagcgtcttttcgtt 8395593  T
Q  165 ttacaacttcaataacttccctcatttccatttctagttcttc 207  Q
    |||| || |||| ||||||||||||||||||||| | ||||||    
T  8395592 ttaccacgtcaacaacttccctcatttccatttccaattcttc 8395550  T

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Target: chr2; HSP #7
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 65 - 207
Target Start/End: Original strand, 8405880 - 8406022
Alignment:
Q  65 gctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactct 164  Q
    ||||||||||| ||||| ||||| ||||| ||||||| ||||||||| | |||||| ||||| ||||||||||| ||||| ||||||  |||||| |  |    
T  8405880 gctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttaccttcaaagctatgtttccaagtctgtcataatcttcagcgtcttttcgtt 8405979  T
Q  165 ttacaacttcaataacttccctcatttccatttctagttcttc 207  Q
    |||| || |||| ||||||||||||||||||||| | ||||||    
T  8405980 ttaccacgtcaacaacttccctcatttccatttccaattcttc 8406022  T

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Target: chr2; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 62 - 206
Target Start/End: Original strand, 8417212 - 8417356
Alignment:
Q  62 attgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttac 161  Q
    |||||||||||||| ||||||||||| ||||| ||||||| ||||||||| | |||||| ||||| ||||||||||| ||||| ||||||   ||||| |    
T  8417212 attgctgcaattcctgtgagtaatggccctgcaattgccaaactcttgtttaccttcaacgctatgtttccaagtctgtcataatcttcagaatcttttc 8417311  T
Q  162 tctttacaacttcaataacttccctcatttccatttctagttctt 206  Q
    |||| |  ||||||   ||||||  |||||||||||||| |||||    
T  8417312 tcttgatcacttcagcgacttcctgcatttccatttctaattctt 8417356  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 192
Target Start/End: Original strand, 8403959 - 8404048
Alignment:
Q  103 actcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactctttacaacttcaataacttccctcatttc 192  Q
    ||||||||||||||| ||||| ||||| || | ||||||||| || ||||| ||||| ||||| || |||||||| || ||| |||||||    
T  8403959 actcttgttaatctttaatgcaatattccctaatctctcataatcctcaatatcttttctcttcaccacttcaattacctccttcatttc 8404048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 184
Target Start/End: Original strand, 8417081 - 8417197
Alignment:
Q  68 gcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactcttta 167  Q
    |||||||| ||||||||||| ||||| ||||| | ||||||||  | |||||| ||||| |||||||| || | ||| ||||||   ||||| |||||||    
T  8417081 gcaattcctgtgagtaatggccctgcaattgctaaactcttgtctaccttcaaagctatgtttccaagcctgttataatcttcagcatcttttctcttta 8417180  T
Q  168 caacttcaataacttcc 184  Q
      ||||||| |||||||    
T  8417181 tcacttcaacaacttcc 8417197  T

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