View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16010_high_29 (Length: 205)
Name: NF16010_high_29
Description: NF16010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16010_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 146; Significance: 4e-77; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 15 - 189
Target Start/End: Original strand, 40080454 - 40080634
Alignment:
| Q |
15 |
agaagaacgtatttgtttttgtctgtgtcttttccttttcctctatctttcaacatcgaccg------acacagttccagcgccgtggcctaaacagttc |
108 |
Q |
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| T |
40080454 |
agaagaacgtatttgtttttgtctgtgtcttttccttttcctcaatctttcaacatcgaccgcagactacacagttccagcgccgtggccgaaacagttc |
40080553 |
T |
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| Q |
109 |
cactcagtcctattcctaaacagaagcggtaatcttagaaaaactgacttctggtatgattgacccaacggacgcatcttc |
189 |
Q |
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| T |
40080554 |
cactcagtcctattcctaaacagaagcggtaatcttagaaaaactgacttctggtatgattggcccaacggacgcatcttc |
40080634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 189
Target Start/End: Original strand, 40086522 - 40086628
Alignment:
| Q |
83 |
ttccagcgccgtggcctaaacagttccactcagtcctattcctaaacagaagcggtaatcttagaaaaactgacttctggtatgattgacccaacggacg |
182 |
Q |
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| T |
40086522 |
ttccatcgccgtggccggaacagtttcattcagtcctattcataaacagaagcggcaatcttcaaaaaaccgacctatggtacgattggcccaaaggacg |
40086621 |
T |
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| Q |
183 |
catcttc |
189 |
Q |
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| T |
40086622 |
caacttc |
40086628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 182
Target Start/End: Original strand, 40074448 - 40074547
Alignment:
| Q |
83 |
ttccagcgccgtggcctaaacagttccactcagtcctattcctaaacagaagcggtaatcttagaaaaactgacttctggtatgattgacccaacggacg |
182 |
Q |
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| T |
40074448 |
ttcctgcgccatggccggaacagttccactcagtcctattcctcaacagaagcggctctcttcgaaaacaagacttatggtacgattggcccaatggacg |
40074547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 182
Target Start/End: Complemental strand, 47392908 - 47392809
Alignment:
| Q |
83 |
ttccagcgccgtggcctaaacagttccactcagtcctattcctaaacagaagcggtaatcttagaaaaactgacttctggtatgattgacccaacggacg |
182 |
Q |
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|||| ||||| ||||| ||||||||||||||||||||||||| ||||||||||| |||| ||||| ||||| ||||| ||||| ||||| ||||| |
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| T |
47392908 |
ttcctgcgccatggccggaacagttccactcagtcctattcctcaacagaagcggctctcttcgaaaacaagacttatggtacgattggcccaatggacg |
47392809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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