View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16010_high_31 (Length: 202)
Name: NF16010_high_31
Description: NF16010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16010_high_31 |
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| [»] scaffold0635 (1 HSPs) |
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Alignment Details
Target: scaffold0635 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: scaffold0635
Description:
Target: scaffold0635; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 3680 - 3498
Alignment:
| Q |
16 |
atacttatgaaatcagaattttataacaaaaataaaatattattattaattttgaaaaggtattatgtaatgaccataatcaacaaatggggagtggtgc |
115 |
Q |
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| T |
3680 |
atacttatgaaatcagaattttataacaaaaataaaatattattattaattttgaaaaggtattatgtaatgaccataatcaacaaatggggagtggtgc |
3581 |
T |
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| Q |
116 |
aggcaagcttggcaggaaagtaagagaattattttatgatgttttctccagaaaatgcggagtaagaagaagagagagaaaat |
198 |
Q |
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| T |
3580 |
aggcaagcttggcaagaaagtaagagaattattttatgatgttttctccggaaaatgtggagtaagaagaagatagaaaaaat |
3498 |
T |
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Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 10043390 - 10043572
Alignment:
| Q |
16 |
atacttatgaaatcagaattttataacaaaaataaaatattattattaattttgaaaaggtattatgtaatgaccataatcaacaaatggggagtggtgc |
115 |
Q |
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| T |
10043390 |
atacttatgaaatcagaattttataacaaaaataaaatattattattaattttgaaaaggtattatgtaatgaccataatcaacaaatggggagtggtgc |
10043489 |
T |
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| Q |
116 |
aggcaagcttggcaggaaagtaagagaattattttatgatgttttctccagaaaatgcggagtaagaagaagagagagaaaat |
198 |
Q |
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| T |
10043490 |
aggcaagcttggcaagaaagtaagagaattattttatgatgttttctccggaaaatgtggagtaagaagaagatagaaaaaat |
10043572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 10105104 - 10105286
Alignment:
| Q |
16 |
atacttatgaaatcagaattttataacaaaaataaaatattattattaattttgaaaaggtattatgtaatgaccataatcaacaaatggggagtggtgc |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
10105104 |
atacttatgaaatcagaattttataacaaaaataaaatattattattaattttgaaaaggtatcatgtaatgaccataatcaacaaatggggagtggtgc |
10105203 |
T |
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| Q |
116 |
aggcaagcttggcaggaaagtaagagaattattttatgatgttttctccagaaaatgcggagtaagaagaagagagagaaaat |
198 |
Q |
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| T |
10105204 |
aggcaagcttggcaagaaagtaagagaattattttatgatgttttctccagaaaatgtggagtaagaagaagatagaaaaaat |
10105286 |
T |
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