View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16010_low_1 (Length: 835)
Name: NF16010_low_1
Description: NF16010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16010_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 785; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 785; E-Value: 0
Query Start/End: Original strand, 5 - 817
Target Start/End: Original strand, 33529880 - 33530692
Alignment:
| Q |
5 |
gagcagcacagacatacctgttaatttatccacaactgataagtttttgttgtgtcataatgtttaaattcgattgcatataatatggaatcaaacatga |
104 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33529880 |
gagcaccacagacatacctgttaatttatccacaactgataagtttttgttgtgtcataatgtttaaatttgattgcatataatatggaatcaaacatga |
33529979 |
T |
|
| Q |
105 |
cttaccaggtgaagttacataatgtctaaacctatcattgcttgagatgcaaaccaaatttgaaccaaatttcaagtccttaacatcttcgccgcgtagc |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33529980 |
cttaccaggtgaagttacataatgtctaaacctatcattacttgagatgcaaaccaaatttgaaccaaatttcaagtccttaacatcttcgccgcgtagc |
33530079 |
T |
|
| Q |
205 |
attttgagttttagttggatttcaaacaaagccctagcaacctcctcatcgcctggcttttctcttatcaacatttcatagtcttgaattgcagcttccc |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33530080 |
attttgagttttagttggatttcaaacaaagccctagcaacctcctcatcgcctggcttttctcttatcaacatttcatagtcttgaattgcagcttccc |
33530179 |
T |
|
| Q |
305 |
atctttccaactattatatgcgaaaaacaaaagaaaataacgagttattaaaccatcggaaaccaagtatatagtaaaatttaatattaatttagaaatt |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33530180 |
atctttccaactattatatgcgaaaaacaaaagaaaataacgagttattaaaccatcggaaaccaagtatatagtaaagtttaatattaatttagaaatt |
33530279 |
T |
|
| Q |
405 |
aaagcaccttagcattgcaatcagctcgccgcaacattgccttgctataattaggctgaactgtaagagctacattgcagtcttcaattgctttctcaaa |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33530280 |
aaagcaccttagcattgcaatcagctcgccgcaacattgccttgctataattaggctgaactgtaagagctacattgcagtcttcaattgctttctcaaa |
33530379 |
T |
|
| Q |
505 |
ttggccgagcttagaacgacaagctgctctgttacataacagaactgagttgaatggatcatactctagtccttcattgtataccgcacatgcttctgtg |
604 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33530380 |
ttggccgagcttagaacgacaagctgctctgttacataacagaactgagttgaatggatcatactctagtccttcattgtataccgcacatgcttccgtg |
33530479 |
T |
|
| Q |
605 |
aactttgatgccttgaagagcaagttaccactcaatctggcagatgtcgcggctcttgcccttcttaccactacattcacatcggtgttgcttggatcaa |
704 |
Q |
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| T |
33530480 |
aactttgatgccttgaagagcaagttaccactcaatctggcagatgtcgcggctcttgcccttcttaccactacattcacatcggtgttgcttggatcaa |
33530579 |
T |
|
| Q |
705 |
gtttaaccgctttctgtgatgctgtcacggcatcctcaaacctgtcaccacataaaaatgcaaaacaacttagggtcacactgaatgagtttcaattatt |
804 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33530580 |
gtttagccgctttctgtgatgctgtcacggcatcctcaaacctgtcaccacataaaaatgcaaaacaacttagggtcacaccgaatgagtttcaattatt |
33530679 |
T |
|
| Q |
805 |
tgtattcgtcaat |
817 |
Q |
| |
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||||||||||||| |
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| T |
33530680 |
tgtattcgtcaat |
33530692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 2e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 105 - 318
Target Start/End: Original strand, 26207556 - 26207769
Alignment:
| Q |
105 |
cttaccaggtgaagttacataatgtctaaacctatcattgcttgagatgcaaaccaaatttgaaccaaatttcaagtccttaacatcttcgccgcgtagc |
204 |
Q |
| |
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||||||||| || |||||||||||||| || | |||||| ||||||||| |||||||||||||||||||||| || ||||||| |||||| || |||||| |
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| T |
26207556 |
cttaccaggcgaggttacataatgtctgaaacgatcattacttgagatgaaaaccaaatttgaaccaaattttaaatccttaatatcttcaccacgtagc |
26207655 |
T |
|
| Q |
205 |
attttgagttttagttggatttcaaacaaagccctagcaacctcctcatcgcctggcttttctcttatcaacatttcatagtcttgaattgcagcttccc |
304 |
Q |
| |
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|| ||||||| || | |||||||||||||| || || || ||||| |||||||||||||||||||||||||| ||||||||||| ||| |||||| |
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| T |
26207656 |
atcttgagttggagccgagcctcaaacaaagcccttgccacttcttcatcccctggcttttctcttatcaacatttcgtagtcttgaatggcaacttccc |
26207755 |
T |
|
| Q |
305 |
atctttccaactat |
318 |
Q |
| |
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||| |||||||||| |
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| T |
26207756 |
atcgttccaactat |
26207769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 485 - 747
Target Start/End: Original strand, 26208176 - 26208438
Alignment:
| Q |
485 |
tcttcaattgctttctcaaattggccgagcttagaacgacaagctgctctgttacataacagaactgagttgaatggatcatactctagtccttcattgt |
584 |
Q |
| |
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|||||||||||||| ||| | || || |||||||||||||| ||||||||||| |||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
26208176 |
tcttcaattgctttttcatactgccctagcttagaacgacacgctgctctgttgcataacagaactgagttgtgtggatcatgatctagtccttcattgt |
26208275 |
T |
|
| Q |
585 |
ataccgcacatgcttctgtgaactttgatgccttgaagagcaagttaccactcaatctggcagatgtcgcggctcttgcccttcttaccactacattcac |
684 |
Q |
| |
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|||| ||||||||||| |||| ||||||||||||||||| ||||| ||||||| ||| | ||||| | ||| | || || |||| |||| |||| || |
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| T |
26208276 |
atactgcacatgcttccatgaattttgatgccttgaagagtaagtttccactcattctagatgatgttactgctttggctctccttaacactgcatttac |
26208375 |
T |
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| Q |
685 |
atcggtgttgcttggatcaagtttaaccgctttctgtgatgctgtcacggcatcctcaaacct |
747 |
Q |
| |
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|| ||||||||||||||| | || | |||| ||| |||| | |||| || ||||||||||| |
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| T |
26208376 |
ctctctgttgcttggatcaactctatctgcttgctgagatgttttcacagcttcctcaaacct |
26208438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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