View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16010_low_10 (Length: 369)
Name: NF16010_low_10
Description: NF16010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16010_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 45734330 - 45734039
Alignment:
| Q |
1 |
ccgttctcacctgaagacaacccctcaacacccaacactcgttctttttctcgattgactcaccatcgttccttcatccggcaaacctcaccctgccatt |
100 |
Q |
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| T |
45734330 |
ccgttctcacctgaagacaacccttcaacacccaacactcattctttttctcgattgactcaccatcgttccttcatccggcaaacctcacccagccatt |
45734231 |
T |
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| Q |
101 |
catgaatgaaatatccatatgcttttgtcattttataactatgttgaataaatttgaacaaatgattaatcactttcaatttattgaactgtttttgagg |
200 |
Q |
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| T |
45734230 |
catgaatgaaatatccatatgcttttgtcattttataactatgttgaataaattcgaacaaatgattgatcactttcaatttattgaactgtttttgagg |
45734131 |
T |
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| Q |
201 |
gagacctgcactttaatgactaatgaactactttaggcgattaatacgaaatatgttggttaaataagtgggtaatataaatacacatttga |
292 |
Q |
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| T |
45734130 |
gagacctgcactttaatgactaatgaactactttaggcgattaatacgaaatatgttggttaaataagtgggtaatataaatacacatttga |
45734039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 45727849 - 45727569
Alignment:
| Q |
1 |
ccgttctcacctgaagacaacccctcaacacccaacactcgttctttttctcgattgactcaccatcgttccttcatccggcaaacctcaccctgccatt |
100 |
Q |
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|||||||||||||||| ||||| |||||||||||| ||||||| ||| | |||||||| |||||||||||| |||| |||||||| ||||| |||| |
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| T |
45727849 |
ccgttctcacctgaagctaaccctcgaacacccaacacacgttcttcttccccgttgactcatcatcgttccttcgtccgacaaacctcgccctgtcatt |
45727750 |
T |
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| Q |
101 |
catgaatgaaa--------------tatccatatgcttttgtcattttataactatgttgaataaatttgaacaaatgattaatcactttcaatttattg |
186 |
Q |
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| T |
45727749 |
catgaatgaaaatacaaatgtggaatatgtatatgcttatgtcattttataactatgttgaataaa-----------gattaatcacttacactttattg |
45727661 |
T |
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| Q |
187 |
aactgtttttgagggagacctgcactttaatgactaatgaactactttaggcgattaatacgaaatatgttggttaaataagtgggtaatat |
278 |
Q |
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|| | |||| | ||||||| |||||||||||| ||||||| || |||||| |||| || |||||||||||||||||||||||| |||||| |
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| T |
45727660 |
aatttttttggggggagactcgcactttaatgattaatgaattagtttaggtgattcatgtgaaatatgttggttaaataagtggataatat |
45727569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 307 - 359
Target Start/End: Complemental strand, 45734052 - 45734000
Alignment:
| Q |
307 |
aaatacacatttgagtggttaataaaatacgggaaatttaattatattcttgg |
359 |
Q |
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| T |
45734052 |
aaatacacatttgagtggttaataaaatacgggaaatttaattatattattgg |
45734000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 335
Target Start/End: Complemental strand, 45727490 - 45727462
Alignment:
| Q |
307 |
aaatacacatttgagtggttaataaaata |
335 |
Q |
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| T |
45727490 |
aaatacacatttgagtggttaataaaata |
45727462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 292
Target Start/End: Complemental strand, 45727505 - 45727477
Alignment:
| Q |
264 |
ataagtgggtaatataaatacacatttga |
292 |
Q |
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| T |
45727505 |
ataagtgggtaatataaatacacatttga |
45727477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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