View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16010_low_11 (Length: 366)
Name: NF16010_low_11
Description: NF16010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16010_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 4960955 - 4960600
Alignment:
| Q |
1 |
atttgagttttagggtttcttctgcgtttcaaacagtttaactacctatttttgagtttatttatccgagagtcaagttggtgtggtggataagatttgc |
100 |
Q |
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| T |
4960955 |
atttgagttttagggtttcttctgcgtttcaaacagtttaactacctatttttgagtttatttatccgagagtcaagttggtg--gtggataagatttgc |
4960858 |
T |
|
| Q |
101 |
tggatatttaatttctaaaggttgcagtgtagcacttagaacaagaaaaaactttggatttcaattgaataaaatgtgttaccccaaaacccttctttcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4960857 |
tggatatttaatttctaaaggttgcagtgtagcacttagaacaagaaaaaactttggatttcaattgaataaaatgtgttaccccaaaacccttctttcc |
4960758 |
T |
|
| Q |
201 |
cttaaaaaacacgctgtatcacacattttgggagtgtttccaatgtcttggatgctatgcattttgtttgcttttcatctttggaacctcactgtgtgtt |
300 |
Q |
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||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4960757 |
cttaaaaaacacgttgtat--cacattttgggagtgtttccaatgtcttggatgcaatgcattttgtttgcttttcatctttggaacctcactgtgtgtt |
4960660 |
T |
|
| Q |
301 |
acttataaatttgtgattatctctctaattctctagaaaatgtgtaatggtctgtgctcc |
360 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4960659 |
acttataaatttgtgattatctctctaattctctagaaaatgtgtaatggtctctgctcc |
4960600 |
T |
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