View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16010_low_13 (Length: 335)
Name: NF16010_low_13
Description: NF16010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16010_low_13 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 11 - 335
Target Start/End: Original strand, 30295741 - 30296063
Alignment:
| Q |
11 |
agcaaaggaatatgagatggtatattgtaaccacaaagctagctgaacccatggcaattagtatcacaccaaatttggtatcgaacaaaggttgataatc |
110 |
Q |
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| T |
30295741 |
agcaaatgaatatgagatggtatattgtaaccacaaagctagctgaacccatggcaattagtatcacaccaaatttggtatcgaacaaaggttgataatc |
30295840 |
T |
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| Q |
111 |
agcatcatcagccataaactgtgtgtgtgagagagaaatgtgacaatgattttgtattgatagaagaaattagtaaaacataaagatgacacagccggcc |
210 |
Q |
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| T |
30295841 |
agcatcatcagccataaactgtg--tgtgagagagaaatgtgacaatgattttgtattgatagaagaaattagtaaaacataaagatgacacagccggcc |
30295938 |
T |
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| Q |
211 |
aaagcactaagatcgttcatatcaatcattctcttcacacttatatcgtgacggtgaaagctatcagatagatatatttttaatttgccaatagctagta |
310 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
30295939 |
aaagcaataagatcgttcatatcaatcattctcttcacacttatatcgtgacggtgaaagctataagatagatatatttttattttgccaatagctagta |
30296038 |
T |
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| Q |
311 |
taagatatggataaagaatacattc |
335 |
Q |
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| T |
30296039 |
taagatatggataaagaatacattc |
30296063 |
T |
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