View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16010_low_15 (Length: 322)

Name: NF16010_low_15
Description: NF16010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16010_low_15
NF16010_low_15
[»] chr5 (1 HSPs)
chr5 (6-305)||(4961133-4961432)


Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 6 - 305
Target Start/End: Original strand, 4961133 - 4961432
Alignment:
Q  6 cacgattgtgctctattacatgaatgcagagaatttgacttcgagagcctaacattccccgttaaccaatccaataannnnnnnacttttcaacaatata 105  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||        |||||||||||||||    
T  4961133 cacgattgtgctctattgcatgaatgcagagaatctgacttcgagagcctaacattccccgttaaccaataaaataatttttttgcttttcaacaatata 4961232  T
Q  106 ctataattaaaagtaagtattaagcagattataactaatctactgacattgtcattatggttgaattggtcaagattttgaactatagaagtgaggctcg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4961233 ctataattaaaagtaagtattaagcagattataactaatctactgacattgtcattatggttgaattggtcaagattttgaactatagaagtgaggctcg 4961332  T
Q  206 tgctctttaatgattaatctaatgggataacaaggacagactctttgttaaaagttgtagccatgaaattcaagtgggtcacctatgctacatgtcttgt 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4961333 tgctctttaatgattaatctaatgggataacaaggacagactctttgttaaaagttgtagccatgaaattcaagtgggtcacctatgctacatgtcttgt 4961432  T

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