View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16010_low_16 (Length: 272)
Name: NF16010_low_16
Description: NF16010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16010_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 48455885 - 48455626
Alignment:
| Q |
1 |
cccattcctaccctcctttccattggaggtgcaactagcaattccacactctttgctttcatcgcctctgaccccacggcacgtgctacattcatcaact |
100 |
Q |
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| T |
48455885 |
cccattcctaccctcctttccattggaggtgcaactagcaattccacactctttgctttcattgcctctgaccccacggcacgtgctaccttcatcaact |
48455786 |
T |
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| Q |
101 |
ctacaatccaagtcgctcgaacctttggattcgatggaatcgacttcgattgggagtttcctacaaccacaaaagaaatgaatgaccttggagaattgct |
200 |
Q |
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| T |
48455785 |
ctacaatccaagtcgctcgaacctttggattcgatggaatcgacttcgattgggagtttcctacaaccacaaaagaaatgaatgaccttggagaattgct |
48455686 |
T |
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| Q |
201 |
tttccaatggcgaagagcaatttccgacgaagcagcctccaccagccggccacctttgct |
260 |
Q |
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| T |
48455685 |
tttccaatggcgaagagcaatttccgacgaagcaacctccaccagccggccacctttgct |
48455626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 48461334 - 48461082
Alignment:
| Q |
8 |
ctaccctcctttccattggaggtgcaactagcaattccacactctttgctttcatcgcctctgaccccacggcacgtgctacattcatcaactctacaat |
107 |
Q |
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| T |
48461334 |
ctactctcttttccattggaggtgcaggtagcaattcatccttgttggccttcatcgcctccgatccacccgcatgtgccgccttcattaactctacaat |
48461235 |
T |
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| Q |
108 |
ccaagtcgctcgaacctttggattcgatggaatcgacttcgattgggagtttcctacaaccacaaaagaaatgaatgaccttggagaattgcttttccaa |
207 |
Q |
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| T |
48461234 |
cgacgttgctcgtacatttggattcgatggaattgacttggattgggagtttcctaaaaacactaaagaaatgaacgacctcggagaaatgctcttccaa |
48461135 |
T |
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| Q |
208 |
tggcgaagagcaatttccgacgaagcagcctccaccagccggccacctttgct |
260 |
Q |
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||||||| ||| || ||||| |||| ||| ||||| |||||||||| ||||| |
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| T |
48461134 |
tggcgaaaagctatctccgatgaaggcgccaccaccggccggccaccgttgct |
48461082 |
T |
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