View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16010_low_19 (Length: 256)
Name: NF16010_low_19
Description: NF16010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16010_low_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 20 - 240
Target Start/End: Original strand, 6325884 - 6326106
Alignment:
| Q |
20 |
gtcaaataaaatagtggatgttagaaagaatgttcaactctatggtctattcactaatattttcacaccccacacaatatttctaatacaaaatattttt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6325884 |
gtcaaataaaatagtggatgttagaaagaatgttcaactctatggtctattcactaatattttcacaccccacaaaatatttctaatacaaaatattttg |
6325983 |
T |
|
| Q |
120 |
tcaatattgaataaactttcnnnnnnncttgagctaaattttccagaagaaaaaactgtagatcggaatacacgcg--annnnnnnnnggaattttagtc |
217 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||| | | |||||||||||| |
|
|
| T |
6325984 |
tcaagattgaataaactttcaaaaaaacttgagctaaattttccagaagaaaaaactgttgattggaatacacggggaatttttttttggaattttagtc |
6326083 |
T |
|
| Q |
218 |
acgcttcaactgtggttaaactg |
240 |
Q |
| |
|
||||||||| ||||||||||||| |
|
|
| T |
6326084 |
acgcttcaaatgtggttaaactg |
6326106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University