View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16010_low_25 (Length: 231)
Name: NF16010_low_25
Description: NF16010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16010_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 35452175 - 35452077
Alignment:
| Q |
1 |
tgggaaaaactaaaggggacaccaactaacataaacacataaacaccagaaaccgagaccaaaaagcaggacaacactacttgactaaccaaccgaata |
99 |
Q |
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| T |
35452175 |
tgggaaaaactaaaggggacaccaactaacagaaacacataaacaccagaaaccgagaccaaaaagcaggacaacattacttgcctaaccaaccgaata |
35452077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 212
Target Start/End: Complemental strand, 35452006 - 35451964
Alignment:
| Q |
170 |
gatcatgccgaacccctgtgaagaagattcaacactgcagtcc |
212 |
Q |
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| T |
35452006 |
gatcacgccgaacccctgtgaagaagattcaacactgcagtcc |
35451964 |
T |
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