View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16010_low_26 (Length: 227)

Name: NF16010_low_26
Description: NF16010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16010_low_26
NF16010_low_26
[»] chr2 (13 HSPs)
chr2 (24-209)||(8431120-8431305)
chr2 (24-194)||(8375855-8376025)
chr2 (31-194)||(8439085-8439248)
chr2 (24-194)||(8395538-8395708)
chr2 (24-194)||(8405864-8406034)
chr2 (24-194)||(8411981-8412151)
chr2 (24-194)||(8434079-8434249)
chr2 (26-212)||(8417201-8417390)
chr2 (24-159)||(8417062-8417197)
chr2 (39-149)||(8368247-8368357)
chr2 (39-149)||(8401053-8401163)
chr2 (39-149)||(8422630-8422740)
chr2 (37-151)||(8403918-8404032)
[»] chr4 (2 HSPs)
chr4 (40-194)||(55336242-55336396)
chr4 (24-194)||(55330788-55330958)


Alignment Details
Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 24 - 209
Target Start/End: Original strand, 8431120 - 8431305
Alignment:
Q  24 aaatgtagatccaatagctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttatcttcaacgctatgtttccaagtctgtcataatct 123  Q
    |||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||    
T  8431120 aaatgtagatcctatagctgcaattcctgagagtaatggccctgcaattgccaaactcttgtttaccttcaatgctatgtttccaagtctatcataatct 8431219  T
Q  124 tcaacatcttttctctttatcacttcaacaacttccctcatttccatttctaattcttcactccatccattcatttttcctatttt 209  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  8431220 tcaacgtcttttctctttatcacttcaacaacatccctcatttccatttctaattcttcactccattcgttcatttttcctatttt 8431305  T

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Target: chr2; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 24 - 194
Target Start/End: Complemental strand, 8376025 - 8375855
Alignment:
Q  24 aaatgtagatccaatagctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttatcttcaacgctatgtttccaagtctgtcataatct 123  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  8376025 aaatgtcgatccaatagctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttaccttcaatgctatgtttccaagtctgtcataatct 8375926  T
Q  124 tcaacatcttttctctttatcacttcaacaacttccctcatttccatttctaattcttcactccatccatt 194  Q
    ||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||    
T  8375925 tcagcgtcttttctctttatcacttcaacaacttccctcatttccatttccaattctttactccacccatt 8375855  T

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Target: chr2; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 31 - 194
Target Start/End: Original strand, 8439085 - 8439248
Alignment:
Q  31 gatccaatagctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttatcttcaacgctatgtttccaagtctgtcataatcttcaacat 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| | |    
T  8439085 gatccaatagctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttaccttcaatgctatgtttccaagtctgtcataatcttcagcgt 8439184  T
Q  131 cttttctctttatcacttcaacaacttccctcatttccatttctaattcttcactccatccatt 194  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||    
T  8439185 cttttctctttatcacttcaacaacttccctcatttccatttccaattctttactccacccatt 8439248  T

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Target: chr2; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 24 - 194
Target Start/End: Complemental strand, 8395708 - 8395538
Alignment:
Q  24 aaatgtagatccaatagctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttatcttcaacgctatgtttccaagtctgtcataatct 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  8395708 aaatgtagatccaatagctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttaccttcaaagctatgtttccaagtctgtcataatct 8395609  T
Q  124 tcaacatcttttctctttatcacttcaacaacttccctcatttccatttctaattcttcactccatccatt 194  Q
    ||| | |||||||  |||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  8395608 tcagcgtcttttcgttttaccacgtcaacaacttccctcatttccatttccaattcttcactccatccatt 8395538  T

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Target: chr2; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 24 - 194
Target Start/End: Original strand, 8405864 - 8406034
Alignment:
Q  24 aaatgtagatccaatagctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttatcttcaacgctatgtttccaagtctgtcataatct 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  8405864 aaatgtagatccaatagctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttaccttcaaagctatgtttccaagtctgtcataatct 8405963  T
Q  124 tcaacatcttttctctttatcacttcaacaacttccctcatttccatttctaattcttcactccatccatt 194  Q
    ||| | |||||||  |||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  8405964 tcagcgtcttttcgttttaccacgtcaacaacttccctcatttccatttccaattcttcactccatccatt 8406034  T

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Target: chr2; HSP #6
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 24 - 194
Target Start/End: Original strand, 8411981 - 8412151
Alignment:
Q  24 aaatgtagatccaatagctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttatcttcaacgctatgtttccaagtctgtcataatct 123  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8411981 aaatgtagatccaattgctgcaattcctgtgagtaatggccctgcaattgccaaactcttgtttaccttcaacgctatgtttccaagtctgtcataatct 8412080  T
Q  124 tcaacatcttttctctttatcacttcaacaacttccctcatttccatttctaattcttcactccatccatt 194  Q
    |||  |||||||||||| ||||||||| | ||||||  |||||||||||||||||||||||||||||||||    
T  8412081 tcagaatcttttctcttgatcacttcagcgacttcctgcatttccatttctaattcttcactccatccatt 8412151  T

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Target: chr2; HSP #7
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 24 - 194
Target Start/End: Original strand, 8434079 - 8434249
Alignment:
Q  24 aaatgtagatccaatagctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttatcttcaacgctatgtttccaagtctgtcataatct 123  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8434079 aaatgtagatccaattgctgcaattcctgtgagtaatggccctgcaattgccaaactcttgtttaccttcaacgctatgtttccaagtctgtcataatct 8434178  T
Q  124 tcaacatcttttctctttatcacttcaacaacttccctcatttccatttctaattcttcactccatccatt 194  Q
    |||  |||||||||||| ||||||||| | ||||||  |||||||||||||||||||||||||||||||||    
T  8434179 tcagaatcttttctcttgatcacttcagcgacttcctgcatttccatttctaattcttcactccatccatt 8434249  T

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Target: chr2; HSP #8
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 26 - 212
Target Start/End: Original strand, 8417201 - 8417390
Alignment:
Q  26 atgtagatccaatagctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttatcttcaacgctatgtttccaagtctgtcataatcttc 125  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8417201 atgtagatccaattgctgcaattcctgtgagtaatggccctgcaattgccaaactcttgtttaccttcaacgctatgtttccaagtctgtcataatcttc 8417300  T
Q  126 aacatcttttctctttatcacttcaacaacttccctcatttccatttctaattcttcactccatcc---attcatttttcctattttctt 212  Q
    |  |||||||||||| ||||||||| | ||||||  |||||||||||||||||||| |||||||||    |||||||| |||||||||||    
T  8417301 agaatcttttctcttgatcacttcagcgacttcctgcatttccatttctaattctttactccatccgttgttcattttccctattttctt 8417390  T

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Target: chr2; HSP #9
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 8417062 - 8417197
Alignment:
Q  24 aaatgtagatccaatagctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttatcttcaacgctatgtttccaagtctgtcataatct 123  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||| || |||||| |||||||||||||| |||| |||||||    
T  8417062 aaatgtagatccaatagcggcaattcctgtgagtaatggccctgcaattgctaaactcttgtctaccttcaaagctatgtttccaagcctgttataatct 8417161  T
Q  124 tcaacatcttttctctttatcacttcaacaacttcc 159  Q
    ||| ||||||||||||||||||||||||||||||||    
T  8417162 tcagcatcttttctctttatcacttcaacaacttcc 8417197  T

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Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 149
Target Start/End: Original strand, 8368247 - 8368357
Alignment:
Q  39 agctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttatcttcaacgctatgtttccaagtctgtcataatcttcaacatcttttctc 138  Q
    |||||||||||| ||||| ||||| |||||||| |||||  |||| |||||||||||| | | |||||| | ||| ||||||||||| | ||||||||||    
T  8368247 agctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatcttcaacaccaagtttcctaatctctcataatcttccatatcttttctc 8368346  T
Q  139 tttatcacttc 149  Q
    || || |||||    
T  8368347 ttcataacttc 8368357  T

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Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 149
Target Start/End: Complemental strand, 8401163 - 8401053
Alignment:
Q  39 agctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttatcttcaacgctatgtttccaagtctgtcataatcttcaacatcttttctc 138  Q
    |||||||||||| ||||| ||||| |||||||| |||||  |||| |||||||||||| | | |||||| | ||| ||||||||||| | ||||||||||    
T  8401163 agctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatcttcaacaccaagtttcctaatctctcataatcttccatatcttttctc 8401064  T
Q  139 tttatcacttc 149  Q
    || || |||||    
T  8401063 ttcataacttc 8401053  T

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Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 149
Target Start/End: Complemental strand, 8422740 - 8422630
Alignment:
Q  39 agctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttatcttcaacgctatgtttccaagtctgtcataatcttcaacatcttttctc 138  Q
    |||||||||||| ||||| ||||| |||||||| |||||  |||| |||||||||||| | | |||||| | ||| ||||||||||| | ||||||||||    
T  8422740 agctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatcttcaacaccaagtttcctaatctctcataatcttccatatcttttctc 8422641  T
Q  139 tttatcacttc 149  Q
    || || |||||    
T  8422640 ttcataacttc 8422630  T

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Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 151
Target Start/End: Original strand, 8403918 - 8404032
Alignment:
Q  37 atagctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttatcttcaacgctatgtttccaagtctgtcataatcttcaacatcttttc 136  Q
    ||||||||||||||||| | ||| || |||  |||||| ||||||||||| ||||| || || || || || | ||| |||||||| |||| ||||||||    
T  8403918 atagctgcaattcctgttaacaaaggtcctaaaattgctaaactcttgttaatctttaatgcaatattccctaatctctcataatcctcaatatcttttc 8404017  T
Q  137 tctttatcacttcaa 151  Q
    |||| | ||||||||    
T  8404018 tcttcaccacttcaa 8404032  T

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Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 40 - 194
Target Start/End: Original strand, 55336242 - 55336396
Alignment:
Q  40 gctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttatcttcaacgctatgtttccaagtctgtcataatcttcaacatcttttctct 139  Q
    ||||||||||| ||||| ||||| ||||| ||||||| ||||||||| |||||||| ||||| ||||||||||| ||||| |||||||  ||||| ||||    
T  55336242 gctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactct 55336341  T
Q  140 ttatcacttcaacaacttccctcatttccatttctaattcttcactccatccatt 194  Q
    |||  ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  55336342 ttacaacttcaataacttccctcatttccatttctaattcttcactccatccatt 55336396  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 194
Target Start/End: Original strand, 55330788 - 55330958
Alignment:
Q  24 aaatgtagatccaatagctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttatcttcaacgctatgtttccaagtctgtcataatct 123  Q
    ||||| ||| || |||||||||||||| ||||| ||||| || ||| |||| |||||||| || | ||| || ||||| ||||||||||| |||||||||    
T  55330788 aaatgcagaacctatagctgcaattccagtgagtaatggaccagcagttgctaaactcttattaacctttaatgctatatttccaagtctttcataatct 55330887  T
Q  124 tcaacatcttttctctttatcacttcaacaacttccctcatttccatttctaattcttcactccatccatt 194  Q
    |||| ||||||  | || |  ||||||| |||||| |||| |||| |||||||||| ||||||||||||||    
T  55330888 tcaatatctttcattttcacaacttcaataacttctctcaattccttttctaattcctcactccatccatt 55330958  T

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