View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16010_low_27 (Length: 227)
Name: NF16010_low_27
Description: NF16010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16010_low_27 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 30296413 - 30296194
Alignment:
| Q |
7 |
aataactcactaacatcctcgtttatagatgtaaattgacatccatatgaggaaatctatgtgttctacctatattctttannnnnnnnngttagaatct |
106 |
Q |
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| T |
30296413 |
aataactcactagcatcctcgtttatggatgcaaattgacatccatatgaggaaatctatgtattctacctatgttctttaatttttt--gttagaatct |
30296316 |
T |
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| Q |
107 |
ttatcacagttattattttactagtttgaaataagaaacataagcatacatttttataatataatatagttatctgtgaaaaattaggtgataaggaatt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30296315 |
ttatcacagttattattttactagtttgaaataagaaacataagcatacatttttataatataatatagttatctgtgaaaaattaggtgataaggaatt |
30296216 |
T |
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| Q |
207 |
atta-ttttgtcactagttaca |
227 |
Q |
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|||| ||||||||||||||||| |
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| T |
30296215 |
attatttttgtcactagttaca |
30296194 |
T |
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