View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16010_low_28 (Length: 220)
Name: NF16010_low_28
Description: NF16010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16010_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 47962580 - 47962766
Alignment:
| Q |
18 |
aaacctctcaactttattaaagtcatacaaccctaccacccacagcaaccgtataccaaatgcgaatggcactgtccacccattgcatcttctcattgct |
117 |
Q |
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| T |
47962580 |
aaacctctcaactttattaaagtcatacaaccccaccacccacagcaaccgtataccaaatgcgaatggcactgtccacccattgcatcttctcattgct |
47962679 |
T |
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| Q |
118 |
tatagcttttaatgttctcctttaggcatgccagttattatttcatgagccacttaaaatttcattgttaccaattttgcatttcat |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
47962680 |
tatagcttttaatgttctcctttaggcatgccagttattatttcatgagccacttaaaaattcattgttaccaattttgcatttcat |
47962766 |
T |
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