View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16010_low_29 (Length: 218)
Name: NF16010_low_29
Description: NF16010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16010_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 4302421 - 4302222
Alignment:
| Q |
1 |
atactgaaaatgaagttccataaggagaatctggatttggttttagtcccttctggattgctgatcatgtttgcttatcacctctttctgctccacagat |
100 |
Q |
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| T |
4302421 |
atactgaaaatgaagttccataaggagaatctggatttggttttagtcccttctggattgctgatcatgtttgcttatcacctctttctgctccacagat |
4302322 |
T |
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| Q |
101 |
atatcaatcggcctcacactacggtcatgggatttgaaaacaatgacaaaagagcctgggttgacagaattatgcaggcaagtaattatccttatccttc |
200 |
Q |
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| T |
4302321 |
atatcaatcggcctcacactacggtcatgggatttgaaaacaatgacaaaagagcctgggttgacagaattatgcaggcaagtaattatccttatccttc |
4302222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 3 - 119
Target Start/End: Original strand, 55810633 - 55810749
Alignment:
| Q |
3 |
actgaaaatgaagttccataaggagaatctggatttggttttagtcccttctggattgctgatcatgtttgcttatcacctctttctgctccacagatat |
102 |
Q |
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|||||||||||||||||| |||||| |||||||||| |||| |||| || || ||||| |||||||||||||||||||||||||||| | |||||| |
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| T |
55810633 |
actgaaaatgaagttccacaaggagtgtctggatttgattttggtcctttgtgagttgctagtcatgtttgcttatcacctctttctgctttatagatat |
55810732 |
T |
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| Q |
103 |
atcaatcggcctcacac |
119 |
Q |
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| T |
55810733 |
ttcaatcgacttcacac |
55810749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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