View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16010_low_3 (Length: 461)
Name: NF16010_low_3
Description: NF16010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16010_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 14 - 444
Target Start/End: Original strand, 33161498 - 33161928
Alignment:
| Q |
14 |
cataggcataagttgcgacgatgctaaggatcaaggcccataaaacgtttccgttggatttatccaccacggtcaagctaaggcccaatagcgtaagtcc |
113 |
Q |
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| T |
33161498 |
cataggcataagttgcgacgatgctaaggatcaaggcccataaaacgtttccgttggatttatccaccacggtcaagctaaggcccaatagcgtaagtcc |
33161597 |
T |
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| Q |
114 |
aataatcattcctccggtgctaatttgcaaaagtcgtcttctaccaagtttgtcaagtaaaaacaaagcaattacaaggaaaacaatttttgttaaacct |
213 |
Q |
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| T |
33161598 |
aataatcattcctccggtgctaatttgcaaaagtcgtcttctaccaagtttgtcaagtaaaaacaaagcaattacaaggaaaacaatttttgttaaacct |
33161697 |
T |
|
| Q |
214 |
actccaatagttgcaagtaaaagcttttctttacttgtaataccagcttttctgaaaattctcggactatataacataacagcttcaataccagttgcat |
313 |
Q |
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| T |
33161698 |
actccaatagttgcaagtaaaagcttttctttacttgtaataccagcttttctgaaaattctcggactatataacataacagcttcaataccagttgcat |
33161797 |
T |
|
| Q |
314 |
gttcgaaaaaatgaatcccaactgcagcaattaacatccaacgtacagaaggcgttggtcttaaaatcaactctttccaaaccccttcaccttgatgaga |
413 |
Q |
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| T |
33161798 |
gttcgaaaaaatgaatcccaactgcagcaattaacatccaacgtacagaaggcgttggtcttaaaatcaactctttccaaaccccttcaccttgatgaga |
33161897 |
T |
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| Q |
414 |
cttttgaggtaacttcacagtttcgtcattg |
444 |
Q |
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| T |
33161898 |
cttttgaggtaacttcacagtttcgtcattg |
33161928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 175; Significance: 5e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 106 - 440
Target Start/End: Original strand, 31988421 - 31988755
Alignment:
| Q |
106 |
gtaagtccaataatcattcctccggtgctaatttgcaaaagtcgtcttctaccaagtttgtcaagtaaaaacaaagcaattacaaggaaaacaatttttg |
205 |
Q |
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||||||||||||||||||||| | ||||||| ||| || | | ||||||||||| ||| |||| ||||| ||||||| |||||| |||| ||| |||| |
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| T |
31988421 |
gtaagtccaataatcattcctgcagtgctaacttgtaataaccttcttctaccaactttatcaatcaaaaataaagcaagtacaagaaaaataatctttg |
31988520 |
T |
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| Q |
206 |
ttaaacctactccaatagttgcaagtaaaagcttttctttacttgtaataccagcttttctgaaaattctcggactatataacataacagcttcaatacc |
305 |
Q |
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|||| || || ||||| |||||||| ||||| |||||||||||| |||||||||||||| | || ||| | ||||||||||||||||||||||||| || |
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| T |
31988521 |
ttaatccaacaccaattgttgcaagcaaaagattttctttacttttaataccagcttttttaaatattttatgactatataacataacagcttcaattcc |
31988620 |
T |
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| Q |
306 |
agttgcatgttcgaaaaaatgaatcccaactgcagcaattaacatccaacgtacagaaggcgttggtcttaaaatcaactctttccaaaccccttcacct |
405 |
Q |
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||||||||| ||||||||||| || ||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
31988621 |
agttgcatgctcgaaaaaatgtattccaactgaagcaattaacatccaacgtacagcaggtgttggtcttaaaatcaactctttccaaacaccttcacct |
31988720 |
T |
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| Q |
406 |
tgatgagacttttgaggtaacttcacagtttcgtc |
440 |
Q |
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| T |
31988721 |
tgatgagacttttgaggtaatttcacaatttcgtc |
31988755 |
T |
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