View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16010_low_30 (Length: 216)
Name: NF16010_low_30
Description: NF16010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16010_low_30 |
 | |
|
| [»] scaffold0394 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 24036706 - 24036523
Alignment:
| Q |
17 |
aattgatggtacacatgtgtcatgtgtagttagtggaagtgagcaaacaaagtttattggaagaaagggatatgctacacaaaatataatggctgtatgt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24036706 |
aattgatggtacacatgtgtcatgtgtagttagtggaagtgagcaaacaaagtttattggaagaaagggatatgctacacaaaatataatggctgtatgt |
24036607 |
T |
|
| Q |
117 |
gattggaacatgtgcttcacttttgtattagctggttgggaaggtactgctcacgatgctcgtgtttttgaccaggctttgaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24036606 |
gattggaacatgtgcttcacttttgtattagctggttgggaaggtactgctcatgatgctcgtgtttttgaccaggctttgaca |
24036523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 52057373 - 52057190
Alignment:
| Q |
17 |
aattgatggtacacatgtgtcatgtgtagttagtggaagtgagcaaacaaagtttattggaagaaagggatatgctacacaaaatataatggctgtatgt |
116 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| || ||||||||||||| |||||||||||||||||||||| |||| |||||| ||||||| |||||| |
|
|
| T |
52057373 |
aattgatggtacacatgtgtcatgcgtagttaggggcagtgagcaaacaaggtttattggaagaaagggatatcctacgcaaaatgtaatggccgtatgt |
52057274 |
T |
|
| Q |
117 |
gattggaacatgtgcttcacttttgtattagctggttgggaaggtactgctcacgatgctcgtgtttttgaccaggctttgaca |
200 |
Q |
| |
|
|||||||| ||||| |||||||||||||| ||||||||| ||||||||||||| ||||||||||||||| |||| ||||||||| |
|
|
| T |
52057273 |
gattggaatatgtgtttcacttttgtattggctggttggaaaggtactgctcatgatgctcgtgttttttaccaagctttgaca |
52057190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 16565120 - 16565291
Alignment:
| Q |
17 |
aattgatggtacacatgtgtcatgtgtagttagtggaagtgagcaaacaaagtttattggaagaaagggatatgctacacaaaatataatggctgtatgt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||| |||||| | ||||||||||| |||| ||||||| |
|
|
| T |
16565120 |
aattgatggtacacatgtgtcatgtgtagttagtgctagtgagcaaccaaggtttattggaagaaaaggatatccaacacaaaatattatggttgtatgt |
16565219 |
T |
|
| Q |
117 |
gattggaacatgtgcttcacttttgtattagctggttgggaaggtactgctcacgatgctcgtgtttttgac |
188 |
Q |
| |
|
|||||||| ||||| ||||||||| ||||||||||||||||||| ||||| || ||||| |||||||||||| |
|
|
| T |
16565220 |
gattggaatatgtgtttcacttttttattagctggttgggaaggcactgcccatgatgcccgtgtttttgac |
16565291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 15618426 - 15618567
Alignment:
| Q |
17 |
aattgatggtacacatgtgtcatgtgtagttagtggaagtgagcaaacaaagtttattggaagaaagggatatgctacacaaaatataatggctgtatgt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| || ||| ||||||||||||||| |||||| | ||||||||||| |||| ||||||| |
|
|
| T |
15618426 |
aattgatggtacacatgtgtcatgtgtagttagtgctagtgagaaaccaaggtttattggaagaaaaggatatccaacacaaaatattatggttgtatgt |
15618525 |
T |
|
| Q |
117 |
gattggaacatgtgcttcacttttgtattagctggttgggaa |
158 |
Q |
| |
|
|||| || ||||| ||||||||||||||| ||||||||||| |
|
|
| T |
15618526 |
gattaaaatatgtgtttcacttttgtattatctggttgggaa |
15618567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 69 - 190
Target Start/End: Original strand, 22698376 - 22698497
Alignment:
| Q |
69 |
tttattggaagaaagggatatgctacacaaaatataatggctgtatgtgattggaacatgtgcttcacttttgtattagctggttgggaaggtactgctc |
168 |
Q |
| |
|
||||||||| ||||||||||| | ||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||| || |||||||||||||| | |
|
|
| T |
22698376 |
tttattggacgaaagggatatccgacacaaaatgtaatggctgtatgtgattggaacatgtgctttacttttgttttagccggatgggaaggtactgccc |
22698475 |
T |
|
| Q |
169 |
acgatgctcgtgtttttgacca |
190 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
22698476 |
atgatgctcgtgtttttgacca |
22698497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 69 - 190
Target Start/End: Complemental strand, 22982154 - 22982033
Alignment:
| Q |
69 |
tttattggaagaaagggatatgctacacaaaatataatggctgtatgtgattggaacatgtgcttcacttttgtattagctggttgggaaggtactgctc |
168 |
Q |
| |
|
||||||||| ||||||||||| | ||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||| || |||||||||||||| | |
|
|
| T |
22982154 |
tttattggacgaaagggatatccgacacaaaatgtaatggctgtatgtgattggaacatgtgctttacttttgttttagccggatgggaaggtactgccc |
22982055 |
T |
|
| Q |
169 |
acgatgctcgtgtttttgacca |
190 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
22982054 |
atgatgctcgtgtttttgacca |
22982033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 69 - 190
Target Start/End: Complemental strand, 22995741 - 22995620
Alignment:
| Q |
69 |
tttattggaagaaagggatatgctacacaaaatataatggctgtatgtgattggaacatgtgcttcacttttgtattagctggttgggaaggtactgctc |
168 |
Q |
| |
|
||||||||| ||||||||||| | ||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||| || |||||||||||||| | |
|
|
| T |
22995741 |
tttattggacgaaagggatatccgacacaaaatgtaatggctgtatgtgattggaacatgtgctttacttttgttttagccggatgggaaggtactgccc |
22995642 |
T |
|
| Q |
169 |
acgatgctcgtgtttttgacca |
190 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
22995641 |
atgatgctcgtgtttttgacca |
22995620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 91 - 196
Target Start/End: Original strand, 56560174 - 56560279
Alignment:
| Q |
91 |
ctacacaaaatataatggctgtatgtgattggaacatgtgcttcacttttgtattagctggttgggaaggtactgctcacgatgctcgtgtttttgacca |
190 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||| ||||| |||| ||||||||||||||| |||| |
|
|
| T |
56560174 |
ctacacaaaatgtaatggccgtatgtgattggaatatgtgtttcacttttgtattggctggttgggaaagtactcctcatgatgctcgtgttttttacca |
56560273 |
T |
|
| Q |
191 |
ggcttt |
196 |
Q |
| |
|
||||| |
|
|
| T |
56560274 |
agcttt |
56560279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 14036219 - 14036402
Alignment:
| Q |
17 |
aattgatggtacacatgtgtcatgtgtagttagtggaagtgagcaaacaaagtttattggaagaaagggatatgctacacaaaatataatggctgtatgt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14036219 |
aattgatggtacacatgtgtcatgtgtagttagtggaagtgagcaaacaaagtttattggaagaaagggatatgctacacaaaatataatggctgtatgt |
14036318 |
T |
|
| Q |
117 |
gattggaacatgtgcttcacttttgtattagctggttgggaaggtactgctcacgatgctcgtgtttttgaccaggctttgaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14036319 |
gattggaacatgtgcttcacttttgtattagctggttgggaaggtactgctcatgatgctcgtgtttttgaccaggctttgaca |
14036402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 13895592 - 13895771
Alignment:
| Q |
17 |
aattgatggtacacatgtgtcatgtgtagttagtggaagtgagcaaacaaagtttattggaagaaagggatatgctacacaaaatataatggctgtatgt |
116 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||| |||||| |
|
|
| T |
13895592 |
aattgatggtacacatgtgtcatgcgtagttagtggcagtgagcaaacaaggtttattggaagaaagggatatcctacacaaaatgtaatggccgtatgt |
13895691 |
T |
|
| Q |
117 |
gattggaacatgtgcttcacttttgtattagctggttgggaaggtactgctcacgatgctcgtgtttttgaccaggcttt |
196 |
Q |
| |
|
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
13895692 |
gattggaatatgtgtttcacttttgtattggctggttgggaaggtactgctcatgatgctcgtgtttttgaccaagcttt |
13895771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 5917451 - 5917280
Alignment:
| Q |
17 |
aattgatggtacacatgtgtcatgtgtagttagtggaagtgagcaaacaaagtttattggaagaaagggatatgctacacaaaatataatggctgtatgt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||| |||||| | ||||||||||| |||||||||||| |
|
|
| T |
5917451 |
aattgatggtacacatgtgtcatgtgtagttagtgctagtgagcaaccaaggtttattggaagaaaaggatatccaacacaaaatattatggctgtatgt |
5917352 |
T |
|
| Q |
117 |
gattggaacatgtgcttcacttttgtattagctggttgggaaggtactgctcacgatgctcgtgtttttgac |
188 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||| ||||| || ||||| |||||||||||| |
|
|
| T |
5917351 |
gattggaatatgtgtttcacttttgtattagctggttgggaaggcactgcccatgatgcccgtgtttttgac |
5917280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 36311174 - 36311345
Alignment:
| Q |
17 |
aattgatggtacacatgtgtcatgtgtagttagtggaagtgagcaaacaaagtttattggaagaaagggatatgctacacaaaatataatggctgtatgt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||| |||||| | ||||||||||| |||||||||||| |
|
|
| T |
36311174 |
aattgatggtacacatgtgtcatgtgtagttagtgctagtgagcaaccaaggtttattggaagaaaaggatatccaacacaaaatattatggctgtatgt |
36311273 |
T |
|
| Q |
117 |
gattggaacatgtgcttcacttttgtattagctggttgggaaggtactgctcacgatgctcgtgtttttgac |
188 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||| ||||| || ||||| |||||||||||| |
|
|
| T |
36311274 |
gattggaatatgtgtttcacttttgtattagctggttgggaaggcactgcccatgatgcccgtgtttttgac |
36311345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 93 - 190
Target Start/End: Complemental strand, 23361392 - 23361295
Alignment:
| Q |
93 |
acacaaaatataatggctgtatgtgattggaacatgtgcttcacttttgtattagctggttgggaaggtactgctcacgatgctcgtgtttttgacca |
190 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| || |||||||||||||||||||| |
|
|
| T |
23361392 |
acacaaaatgtaatggttgtatgtgattggaacatgtgctttacttttgttttagctggatgggaaggtactgcccatgatgctcgtgtttttgacca |
23361295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 176; Significance: 5e-95; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 192978 - 193161
Alignment:
| Q |
17 |
aattgatggtacacatgtgtcatgtgtagttagtggaagtgagcaaacaaagtttattggaagaaagggatatgctacacaaaatataatggctgtatgt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
192978 |
aattgatggtacacatgtgtcatgtgtagttagtggaagtgagcaaacaaagtttattggaagaaagggatatgctacacaaaatataatggatgtatgt |
193077 |
T |
|
| Q |
117 |
gattggaacatgtgcttcacttttgtattagctggttgggaaggtactgctcacgatgctcgtgtttttgaccaggctttgaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
193078 |
gattggaacatgtgcttcacttttgtattagctggttgggaaggtactgctcatgatgctcgtgtttttgaccaggctttgaca |
193161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 720582 - 720765
Alignment:
| Q |
17 |
aattgatggtacacatgtgtcatgtgtagttagtggaagtgagcaaacaaagtttattggaagaaagggatatgctacacaaaatataatggctgtatgt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
720582 |
aattgatggtacacatgtgtcatgtgtagttagtggaagtgagcaaacaaagtttattggaagaaagggatatgctacacaaaatataatggatgtatgt |
720681 |
T |
|
| Q |
117 |
gattggaacatgtgcttcacttttgtattagctggttgggaaggtactgctcacgatgctcgtgtttttgaccaggctttgaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
720682 |
gattggaacatgtgcttcacttttgtattagctggttgggaaggtactgctcatgatgctcgtgtttttgaccaggctttgaca |
720765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 881689 - 881872
Alignment:
| Q |
17 |
aattgatggtacacatgtgtcatgtgtagttagtggaagtgagcaaacaaagtttattggaagaaagggatatgctacacaaaatataatggctgtatgt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
881689 |
aattgatggtacacatgtgtcatgtgtagttagtggaagtgagcaaacaaagtttattggaagaaagggatatgctacacaaaatataatggatgtatgt |
881788 |
T |
|
| Q |
117 |
gattggaacatgtgcttcacttttgtattagctggttgggaaggtactgctcacgatgctcgtgtttttgaccaggctttgaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
881789 |
gattggaacatgtgcttcacttttgtattagctggttgggaaggtactgctcatgatgctcgtgtttttgaccaggctttgaca |
881872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 69 - 190
Target Start/End: Original strand, 19647836 - 19647957
Alignment:
| Q |
69 |
tttattggaagaaagggatatgctacacaaaatataatggctgtatgtgattggaacatgtgcttcacttttgtattagctggttgggaaggtactgctc |
168 |
Q |
| |
|
||||||||| |||||||||| | ||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| | |
|
|
| T |
19647836 |
tttattggacaaaagggatatccgacacaaaatgtaatggctgtatgtgattggaacatgtgctttacttttgttttagctggatgggaaggtactgccc |
19647935 |
T |
|
| Q |
169 |
acgatgctcgtgtttttgacca |
190 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
19647936 |
atgatgctcgtgtttttgacca |
19647957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 96 - 196
Target Start/End: Original strand, 44239793 - 44239893
Alignment:
| Q |
96 |
caaaatataatggctgtatgtgattggaacatgtgcttcacttttgtattagctggttgggaaggtactgctcacgatgctcgtgtttttgaccaggctt |
195 |
Q |
| |
|
|||||| ||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
44239793 |
caaaatgtaatggccgtatgtgattggaatatgtgtttcacttttgtattggctggttgggaaggtactgctcatgatgctcgtgtttttgaccaagctt |
44239892 |
T |
|
| Q |
196 |
t |
196 |
Q |
| |
|
| |
|
|
| T |
44239893 |
t |
44239893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 166
Target Start/End: Complemental strand, 9553980 - 9553868
Alignment:
| Q |
54 |
agtgagcaaacaaagtttattggaagaaagggatatgctacacaaaatataatggctgtatgtgattggaacatgtgcttcacttttgtattagctggtt |
153 |
Q |
| |
|
||||||| | |||| ||||||| || ||| ||||| | ||||||||||||||| |||||||||| |||| || || |||||| |||||||||||| | |
|
|
| T |
9553980 |
agtgagctagcaaattttattgtaacaaaatgatatccaacacaaaatataatgattgtatgtgataggaatatatgtttcactcttgtattagctgaat |
9553881 |
T |
|
| Q |
154 |
gggaaggtactgc |
166 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
9553880 |
gggaatgtactgc |
9553868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 176; Significance: 5e-95; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 51125875 - 51125692
Alignment:
| Q |
17 |
aattgatggtacacatgtgtcatgtgtagttagtggaagtgagcaaacaaagtttattggaagaaagggatatgctacacaaaatataatggctgtatgt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
51125875 |
aattgatggtacacatgtgtcatgtgtagttagtggaagtgagcaaacaaagtttattggaagaaagggatatgctacacaaaatataatggatgtatgt |
51125776 |
T |
|
| Q |
117 |
gattggaacatgtgcttcacttttgtattagctggttgggaaggtactgctcacgatgctcgtgtttttgaccaggctttgaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
51125775 |
gattggaacatgtgcttcacttttgtattagctggttgggaaggtactgctcatgatgctcgtgtttttgaccaggctttgaca |
51125692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 26 - 184
Target Start/End: Complemental strand, 16247283 - 16247125
Alignment:
| Q |
26 |
tacacatgtgtcatgtgtagttagtggaagtgagcaaacaaagtttattggaagaaagggatatgctacacaaaatataatggctgtatgtgattggaac |
125 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||| ||||| ||||||||||||| |||| ||||||||||||||| |
|
|
| T |
16247283 |
tacacatgtgtcatgtgtaattagtgctagtgagcaaccaaagtttattggaagaaaatgatatcctacacaaaatattatggatgtatgtgattggaat |
16247184 |
T |
|
| Q |
126 |
atgtgcttcacttttgtattagctggttgggaaggtactgctcacgatgctcgtgtttt |
184 |
Q |
| |
|
||||| |||||||||||||||||||||||| || ||||||| || | ||||||||||| |
|
|
| T |
16247183 |
atgtgtttcacttttgtattagctggttggaaaagtactgcccataacgctcgtgtttt |
16247125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 69 - 190
Target Start/End: Original strand, 7011297 - 7011417
Alignment:
| Q |
69 |
tttattggaagaaagggatatgctacacaaaatataatggctgtatgtgattggaacatgtgcttcacttttgtattagctggttgggaaggtactgctc |
168 |
Q |
| |
|
||||||||| ||||||||||| | ||||||||| ||||||||||||||||||||||||| ||||| || ||||| |||||||| |||||||||| ||| | |
|
|
| T |
7011297 |
tttattggacgaaagggatatccgacacaaaatgtaatggctgtatgtgattggaacatttgctttac-tttgttttagctggatgggaaggtagtgccc |
7011395 |
T |
|
| Q |
169 |
acgatgctcgtgtttttgacca |
190 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
7011396 |
atgatgctcgtgtttttgacca |
7011417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 33232049 - 33232228
Alignment:
| Q |
17 |
aattgatggtacacatgtgtcatgtgtagttagtggaagtgagcaaacaaagtttattggaagaaagggatatgctacacaaaatataatggctgtatgt |
116 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||| |||||| |
|
|
| T |
33232049 |
aattgatggtacacatgtgtcatgcgtagttagtggcagtgagcaaacaaggtttattggaagaaagggatatcctacacaaaatgtaatggccgtatgt |
33232148 |
T |
|
| Q |
117 |
gattggaacatgtgcttcacttttgtattagctggttgggaaggtactgctcacgatgctcgtgtttttgaccaggcttt |
196 |
Q |
| |
|
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
33232149 |
gattggaatatgtgtttcacttttgtatttgctggttgggaaggtactgctcatgatgctcgtgtttttgaccaagcttt |
33232228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 22481092 - 22481263
Alignment:
| Q |
17 |
aattgatggtacacatgtgtcatgtgtagttagtggaagtgagcaaacaaagtttattggaagaaagggatatgctacacaaaatataatggctgtatgt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||| |||||| | ||||||||||| |||||||||||| |
|
|
| T |
22481092 |
aattgatggtacacatgtgtcatgtgtagttagtgctagtgagcaaccaaggtttattggaagaaaaggatatccaacacaaaatattatggctgtatgt |
22481191 |
T |
|
| Q |
117 |
gattggaacatgtgcttcacttttgtattagctggttgggaaggtactgctcacgatgctcgtgtttttgac |
188 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||| ||||| || ||||| |||||||||||| |
|
|
| T |
22481192 |
gattggaatatgtgtttcacttttgtattagctggttgggaaggcactgcccatgatgcccgtgtttttgac |
22481263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 39 - 190
Target Start/End: Original strand, 22809612 - 22809763
Alignment:
| Q |
39 |
tgtgtagttagtggaagtgagcaaacaaagtttattggaagaaagggatatgctacacaaaatataatggctgtatgtgattggaacatgtgcttcactt |
138 |
Q |
| |
|
||||||||||||| | ||| ||||| | ||||||||| ||||||||||| | ||||||||| |||||| | ||||||||||||||||||| || |||| |
|
|
| T |
22809612 |
tgtgtagttagtgccaatgatcaaactagatttattggatgaaagggatatccgacacaaaatgtaatggatttatgtgattggaacatgtgttttactt |
22809711 |
T |
|
| Q |
139 |
ttgtattagctggttgggaaggtactgctcacgatgctcgtgtttttgacca |
190 |
Q |
| |
|
|||| |||||||| |||||||||||||| || |||||||||||||||||||| |
|
|
| T |
22809712 |
ttgttttagctggatgggaaggtactgcccatgatgctcgtgtttttgacca |
22809763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 16841437 - 16841501
Alignment:
| Q |
18 |
attgatggtacacatgtgtcatgtgtagttagtggaagtgagcaaacaaagtttattggaagaaa |
82 |
Q |
| |
|
||||||||||| |||||||||||| |||||||| |||||| || ||| ||||||||||||||| |
|
|
| T |
16841437 |
attgatggtacgcatgtgtcatgttcagttagtgctagtgagaaaccaaggtttattggaagaaa |
16841501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 7072384 - 7072339
Alignment:
| Q |
155 |
ggaaggtactgctcacgatgctcgtgtttttgaccaggctttgaca |
200 |
Q |
| |
|
|||||||||| |||| ||||||||||||| |||||| ||||||||| |
|
|
| T |
7072384 |
ggaaggtactactcatgatgctcgtgtttatgaccaagctttgaca |
7072339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 185
Target Start/End: Original strand, 16841503 - 16841571
Alignment:
| Q |
116 |
tgattggaacatgtgcttcacttttgtattagctggttgggaaggtactgctcacgatgctcgtgttttt |
185 |
Q |
| |
|
||||||||| ||||| |||| ||||||||||||||||| ||||||||||| || || ||| |||||||| |
|
|
| T |
16841503 |
tgattggaatatgtgtttcaattttgtattagctggtt-agaaggtactgcccatgacgcttgtgttttt |
16841571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 4e-71; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 46407080 - 46407259
Alignment:
| Q |
17 |
aattgatggtacacatgtgtcatgtgtagttagtggaagtgagcaaacaaagtttattggaagaaagggatatgctacacaaaatataatggctgtatgt |
116 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||| |||||| |
|
|
| T |
46407080 |
aattgatggtacacatgtgtcatgcgtagttagtggcagtgagcaaacaaggtttattggaagaaagggatatcctacacaaaatgtaatggccgtatgt |
46407179 |
T |
|
| Q |
117 |
gattggaacatgtgcttcacttttgtattagctggttgggaaggtactgctcacgatgctcgtgtttttgaccaggcttt |
196 |
Q |
| |
|
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
46407180 |
gattggaatatgtgtttcacttttgtattggctggttgggaaggtactgctcatgatgctcgtgtttttgaccaagcttt |
46407259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 35605918 - 35606102
Alignment:
| Q |
17 |
aattgatggtacacatgtgtcatgtgtagttagtggaagtgagcaaacaaagtttattggaagaaagggatatgctaca-caaaatataatggctgtatg |
115 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||| ||||| ||||| |||||| ||||||||||||| |
|
|
| T |
35605918 |
aattgatggtacacatgtgtcatgcgtagttagtggcagtgagcaaacaaggtttattggaagaaagagatatcctacaacaaaatgtaatggctgtatg |
35606017 |
T |
|
| Q |
116 |
tgattggaacatgtgcttcacttttgtattagctggttgggaaggtactgctcacgatgctcgtgtttttgaccaggctttgaca |
200 |
Q |
| |
|
|||||| || ||||| |||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
35606018 |
tgattgaaatatgtgtttcacttttgtattggttggttgggaaggtactgctcatgatgctcgtgtttttgaccaagctttgaca |
35606102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 35570413 - 35570242
Alignment:
| Q |
17 |
aattgatggtacacatgtgtcatgtgtagttagtggaagtgagcaaacaaagtttattggaagaaagggatatgctacacaaaatataatggctgtatgt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||| |||||| | ||||||||||| |||||||||||| |
|
|
| T |
35570413 |
aattgatggtacacatgtgtcatgtgtagttagtgctagtgagcaaccaaggtttattggaagaaaaggatatccaacacaaaatattatggctgtatgt |
35570314 |
T |
|
| Q |
117 |
gattggaacatgtgcttcacttttgtattagctggttgggaaggtactgctcacgatgctcgtgtttttgac |
188 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||| ||||| || ||||| |||||||||||| |
|
|
| T |
35570313 |
gattggaatatgtgtttcacttttgtattagctggttgggaaggcactgcccatgatgcccgtgtttttgac |
35570242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 69 - 190
Target Start/End: Original strand, 4345632 - 4345753
Alignment:
| Q |
69 |
tttattggaagaaagggatatgctacacaaaatataatggctgtatgtgattggaacatgtgcttcacttttgtattagctggttgggaaggtactgctc |
168 |
Q |
| |
|
||||||||| ||||||||||| | ||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| | |
|
|
| T |
4345632 |
tttattggacgaaagggatatccgacacaaaatgtaatggctgtatgtgattggaacatgtgctttacttttgttttagctggatgggaaggtactgccc |
4345731 |
T |
|
| Q |
169 |
acgatgctcgtgtttttgacca |
190 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
4345732 |
atgatgctcgtgtttttgacca |
4345753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 116; Significance: 3e-59; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 16547033 - 16547204
Alignment:
| Q |
17 |
aattgatggtacacatgtgtcatgtgtagttagtggaagtgagcaaacaaagtttattggaagaaagggatatgctacacaaaatataatggctgtatgt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||| |||||| | ||||||||||| |||||||||||| |
|
|
| T |
16547033 |
aattgatggtacacatgtgtcatgtgtagttagtgctagtgagcaaccaaggtttattggaagaaaaggatatccaacacaaaatattatggctgtatgt |
16547132 |
T |
|
| Q |
117 |
gattggaacatgtgcttcacttttgtattagctggttgggaaggtactgctcacgatgctcgtgtttttgac |
188 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||| ||||| || ||||| |||||||||||| |
|
|
| T |
16547133 |
gattggaatatgtgtttcacttttgtattagctggttgggaaggcactgcccatgatgcccgtgtttttgac |
16547204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 17831267 - 17831096
Alignment:
| Q |
17 |
aattgatggtacacatgtgtcatgtgtagttagtggaagtgagcaaacaaagtttattggaagaaagggatatgctacacaaaatataatggctgtatgt |
116 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||| ||| ||||||||||| ||| |||||| | ||||||||||| |||||||||||| |
|
|
| T |
17831267 |
aattgatggtacacatgtgtcatgtgaagttagtgctagtgagcaaccaaggtttattggaataaaaggatatccaacacaaaatattatggctgtatgt |
17831168 |
T |
|
| Q |
117 |
gattggaacatgtgcttcacttttgtattagctggttgggaaggtactgctcacgatgctcgtgtttttgac |
188 |
Q |
| |
|
|||||||| || || |||||||||||||||||||||| |||||| ||||| || |||| |||||||||||| |
|
|
| T |
17831167 |
gattggaatatatgtttcacttttgtattagctggttcggaaggcactgcccatgatgtccgtgtttttgac |
17831096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 37638284 - 37638455
Alignment:
| Q |
17 |
aattgatggtacacatgtgtcatgtgtagttagtggaagtgagcaaacaaagtttattggaagaaagggatatgctacacaaaatataatggctgtatgt |
116 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||| ||||| | ||||||||||| |||| ||||||| |
|
|
| T |
37638284 |
aattgatgttacacatgtgtcatgtgtagttagtgctagtgagcaaccaaggtttattggaagaaaatgatatccaacacaaaatattatggttgtatgt |
37638383 |
T |
|
| Q |
117 |
gattggaacatgtgcttcacttttgtattagctggttgggaaggtactgctcacgatgctcgtgtttttgac |
188 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| |||||||||||| ||||| || ||||| |||||||||||| |
|
|
| T |
37638384 |
gattggaatatgtgtttcacttttgtattaggtggttgggaaggcactgcccatgatgcccgtgtttttgac |
37638455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 63 - 188
Target Start/End: Complemental strand, 10373168 - 10373043
Alignment:
| Q |
63 |
acaaagtttattggaagaaagggatatgctacacaaaatataatggctgtatgtgattggaacatgtgcttcacttttgtattagctggttgggaaggta |
162 |
Q |
| |
|
|||| ||||||||||||||| |||||| | ||||||||||| |||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||| | |
|
|
| T |
10373168 |
acaaggtttattggaagaaaaggatatccaacacaaaatattatggctgtatgtgattggaatatgtgtttcacttttatattagctggttgggaaggca |
10373069 |
T |
|
| Q |
163 |
ctgctcacgatgctcgtgtttttgac |
188 |
Q |
| |
|
|||| || ||||| |||||||||||| |
|
|
| T |
10373068 |
ctgcccatgatgcccgtgtttttgac |
10373043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0394 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: scaffold0394
Description:
Target: scaffold0394; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 9240 - 9084
Alignment:
| Q |
17 |
aattgatggtacacatgtgtcatgtgtagttagtggaagtgagcaaacaaagtttattggaagaaagggatatgctacacaaaatataatggctgtatgt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||| ||||| | |||| ||||| |||||||||||| |
|
|
| T |
9240 |
aattgatggtacacatgtgtcatgtgtagttagtgctagtgagcaaccaaggtttattggaagaaaatgatatccaacac--aatattatggctgtatgt |
9143 |
T |
|
| Q |
117 |
gattggaacatgtgcttcacttttgtattagctggttgggaaggtactgctcacgatgc |
175 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| ||||||||||| ||||| || ||||| |
|
|
| T |
9142 |
gattggaatatgtgtttcacttttgtattagtgggttgggaaggcactgcccatgatgc |
9084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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