View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16010_low_31 (Length: 213)
Name: NF16010_low_31
Description: NF16010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16010_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 35612100 - 35611906
Alignment:
| Q |
1 |
ccaaaactttaacacattgaaaatgtcacaaatcatttgatctttcatgtttttcacttgattattattttactattgagtataatagtccaaaaataaa |
100 |
Q |
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| T |
35612100 |
ccaaaactttaacacattgaaaatgtcacaaatcatttgatctttcatgtttttcacttgattattattttactattgagtataatagtccaaaaataaa |
35612001 |
T |
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| Q |
101 |
ataaaaggaacttaatattattgcaccttgtccatgtaacgtttgagtagaattggtacatgagatttgggtttgagtcctccatacacagatcc |
195 |
Q |
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| T |
35612000 |
ataaaaggaacttaatattattgcaccttgtccatgtaacgtttaagtagaatcggtacatgagatttgggtttgagtcctccatacacagatcc |
35611906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 184
Target Start/End: Complemental strand, 35616221 - 35616162
Alignment:
| Q |
125 |
accttgtccatgtaacgtttgagtagaattggtacatgagatttgggtttgagtcctcca |
184 |
Q |
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| T |
35616221 |
accttgtccatgtatcttttgagtagaatggatacatgagacttaggtttgagtcctcca |
35616162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 38027597 - 38027658
Alignment:
| Q |
123 |
gcaccttgtccatgtaacgtttgagtagaattggtacatgagatttgggtttgagtcctcca |
184 |
Q |
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| T |
38027597 |
gcaccttgtccatgtagcgtttaaaaagaatgggtacatcagacttgggtttgagtcctcca |
38027658 |
T |
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