View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16010_low_36 (Length: 203)
Name: NF16010_low_36
Description: NF16010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16010_low_36 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 12840999 - 12840799
Alignment:
| Q |
1 |
agtagaagatgaaagaaaagctgcagcaggagctgaaagaagagcaaaaacggatgccacagaaagttccaaatcggttacttgtggagtgacccgagat |
100 |
Q |
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| T |
12840999 |
agtagaagatgaaagaagagctgcagcaggagctgaaagaagagcagaaaaggatgccacagaaagttccaaatcggttacttctggagtgacccgagat |
12840900 |
T |
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| Q |
101 |
acggcatcaagcctatcaaataccgaaaccaaggaatctggtatgggttttctttctccactcacatttagaatatgtctttccaatgtcagtttttgct |
200 |
Q |
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| T |
12840899 |
acggcatcaagcctatcaaataccgaaaccaaggaatctggtatgggtttcctttttccactcacatttaga--atgtctttccaatgtcagtttttgct |
12840802 |
T |
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| Q |
201 |
ctc |
203 |
Q |
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||| |
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| T |
12840801 |
ctc |
12840799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 197
Target Start/End: Original strand, 39175490 - 39175622
Alignment:
| Q |
61 |
agaaagttccaaatcggttacttgtggagtgacccgagatacggcatcaagcctatcaaataccgaaaccaaggaatctggtatgggttttctttctcca |
160 |
Q |
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| T |
39175490 |
agaaaattccaaaactgttacttctggtgtgacacaagaaaccgcatcaagcctattaaatactgaaaccaaggaatccagtatgggttttcttttt--- |
39175586 |
T |
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| Q |
161 |
ctcacatttagaatatgtctttccaatgtcagttttt |
197 |
Q |
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| T |
39175587 |
-tcacttttagatcatatctttccaatgtcagttttt |
39175622 |
T |
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