View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16010_low_4 (Length: 456)
Name: NF16010_low_4
Description: NF16010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16010_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 3 - 353
Target Start/End: Original strand, 9981786 - 9982136
Alignment:
| Q |
3 |
acttgtcgtaaaataagttcaaatcagtcgtaaataagttttttctaaacaaatcctaaacctaaaacgagttcagaagtaatattcaatgctagtttag |
102 |
Q |
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| T |
9981786 |
acttgtcataaaataagttcaaatcagtcataaataagttttttctaaacaaatcctaaacctaaaacgagttcagaagtaatattcaatgctagtttag |
9981885 |
T |
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| Q |
103 |
tagtttatcgatgtattgaaaagtaaaacaactcaaacttactaatggaatcagttcttgatgtgtctttaaaggaaatcaagctttcacgtaatcagct |
202 |
Q |
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| T |
9981886 |
tcgtttatcgatgtattgaaaaataaaacaactcaaacttactaatggaatcagttcttgatgtgtctttaaaggaaatcaagctttcacgtaatcagct |
9981985 |
T |
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| Q |
203 |
ccgtcacgctttcgtttgttattccttgaaaagaagcagatattagcccaactccttttctgcttaagtggctgtggtttaacatctttcttatccctct |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9981986 |
ccgtcacgctttcgtttgttattccttgaaaagaagcagatattagcccaactctttttctgcttaagtggctgtggtttaacatctttcttatccctct |
9982085 |
T |
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| Q |
303 |
tcaccacaaactcagccatgtactgaacaacagcctaagatgcaccaacac |
353 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9982086 |
tctccacaaactcagccatgtactgaacaacagcctaagatgcaccaacac |
9982136 |
T |
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