View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16010_low_7 (Length: 397)
Name: NF16010_low_7
Description: NF16010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16010_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 20 - 387
Target Start/End: Original strand, 40511887 - 40512258
Alignment:
| Q |
20 |
gtgtgcatgtacaattgccaagaaagtcaagttcaacactctcctctgtttagataaaattcactcatcagaagaggttgtagttcgagtatgaagtatc |
119 |
Q |
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| T |
40511887 |
gtgtgcatgtacacttgccaaaaaaatcaagttcaacactctcctcagtttagataaaattcactcatcaaaagaggttgtagttcgagtatgaagtatc |
40511986 |
T |
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| Q |
120 |
aataaatatnnnnnnnnnnn----tgattatattggtatccaattaataaaatttattcgtaaaccaacttatccgtcaacgttcttttagaactgaggt |
215 |
Q |
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| T |
40511987 |
aataaatataaaaaaaaataaaattgattatattggtatctaatgaataaaatttattcgtaaaccaacttatccgtcaacgttcttttagaactgaggt |
40512086 |
T |
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| Q |
216 |
tgaactaagaccagatcttatgaatgaattgttgctcttattcattcaataatcgtctcggttgaggaattgaatttaacttgnnnnnnncctcactcaa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
40512087 |
tgaactaagaccagatcttatgaatgaattgttgctcttattcattcaataatcgtctcggttgaggaattgagtttaacttgtttttttcctcactcaa |
40512186 |
T |
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| Q |
316 |
aatgctttgttttgttgcaacctaaataacaatgtaatccaatttgttaaggtttgtacgcagctccctatg |
387 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
40512187 |
aatgatttgttttgttgcaacctaaataacaatgtaatccaatttgttaaggttggtacgcagctctctatg |
40512258 |
T |
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