View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16010_low_8 (Length: 381)
Name: NF16010_low_8
Description: NF16010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16010_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 12 - 363
Target Start/End: Complemental strand, 5823184 - 5822833
Alignment:
| Q |
12 |
tgagatgaatatcaatggtgaaaccgagtatcaatgtcgaacatctgaagttatggtggagagaatagcagcatacatagagacagaccaatgtgtggaa |
111 |
Q |
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||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
5823184 |
tgagaagaatatcaatggtgaaaccgagtatcaatgccgaacatctgaagttatggtggagagaatagcagcatacatagagacagacgaatgtgtagaa |
5823085 |
T |
|
| Q |
112 |
gcatgtggtgttgatagaagttctgttggtatttcatctgatgctttctttgagccttacttcacaagcaagctttgttctccatcttgtttctctaagt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5823084 |
gcatgtggtgttgatagaagttctgttggtatttcatctgatgctttctttgagccttacttcacaagcaagctttgttctccatcttgtttctctaagt |
5822985 |
T |
|
| Q |
212 |
gtcccaatattgttgaccttttcttcaatttggctgctggagaaggtaacaattgtttgttaatgctactattttatttaccatcatcacatacatttgt |
311 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5822984 |
gtcccaatattgttgaccttttctttaatttggctgctggagaaggtaacaattgtttgttaatgc-actattttatttaccatcatcacatacatttgt |
5822886 |
T |
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| Q |
312 |
caaagtcaatgagaat-nnnnnnnnnttacttcccaagaccaatacatgatat |
363 |
Q |
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| T |
5822885 |
caaagtcaatgagaataaaaaaaaatttacttcccaagaccaatacatgatat |
5822833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 12 - 327
Target Start/End: Original strand, 5828693 - 5829007
Alignment:
| Q |
12 |
tgagatgaatatcaatggtgaaaccgagtatcaatgtcgaacatctgaagttatggtggagagaatagcagcatacatagagacagaccaatgtgtggaa |
111 |
Q |
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| T |
5828693 |
tgagaagaatatcaatggtgaaaccgagtatcaatgccgaacatctgaagttatggtggagagaatagcagcatacatagagacagatcaatgtgtggaa |
5828792 |
T |
|
| Q |
112 |
gcatgtggtgttgatagaagttctgttggtatttcatctgatgctttctttgagccttacttcacaagcaagctttgttctccatcttgtttctctaagt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5828793 |
gcatgtggtgttgatagaagttctgttggtatttcatctgatgctttctttgagccttacttcacaagcaagctttgttctccatcttgtttctctaagt |
5828892 |
T |
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| Q |
212 |
gtcccaatattgttgaccttttcttcaatttggctgctggagaaggtaacaattgtttgttaatgctactattttatttaccatcatcacatacatttgt |
311 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5828893 |
gtcccaatattgttgaccttttctttaatttggctgctggagaaggtaagacttgtttgttaatgc-actattttatttaccatcatcacatacatttgt |
5828991 |
T |
|
| Q |
312 |
caaagtcaatgagaat |
327 |
Q |
| |
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||||||||||| |||| |
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| T |
5828992 |
caaagtcaatgtgaat |
5829007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 23 - 260
Target Start/End: Complemental strand, 5833051 - 5832814
Alignment:
| Q |
23 |
tcaatggtgaaaccgagtatcaatgtcgaacatctgaagttatggtggagagaatagcagcatacatagagacagaccaatgtgtggaagcatgtggtgt |
122 |
Q |
| |
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|||||||||||| |||||||||||| |||||||||||||||| ||||||||||| ||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
5833051 |
tcaatggtgaaattgagtatcaatgtagaacatctgaagttatagtggagagaatttcagagtacatagagacagatcaatgtgtggaagcatgtggtgt |
5832952 |
T |
|
| Q |
123 |
tgatagaagttctgttggtatttcatctgatgctttctttgagccttacttcacaagcaagctttgttctccatcttgtttctctaagtgtcccaatatt |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||| ||||| || ||| |||||| | ||||| || || ||| |
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| T |
5832951 |
tgatagaagttctgttggtatttcatctgatgctttctttgagccacaattcaccggcaaactttgctcaccagcttgttacaaaaagtgccctaacatt |
5832852 |
T |
|
| Q |
223 |
gttgaccttttcttcaatttggctgctggagaaggtaa |
260 |
Q |
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| T |
5832851 |
gttgaccttttcttcaatatggctgctggagagggtaa |
5832814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 36 - 260
Target Start/End: Complemental strand, 24038658 - 24038434
Alignment:
| Q |
36 |
cgagtatcaatgtcgaacatctgaagttatggtggagagaatagcagcatacatagagacagaccaatgtgtggaagcatgtggtgttgatagaagttct |
135 |
Q |
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||||||||||||| | ||||| ||||| || ||||| |||| || | ||||||||||||||| ||||||||| |||||||||| ||||| || | || | |
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| T |
24038658 |
cgagtatcaatgtaggacatcagaagtagtgttggagcgaatggcgggatacatagagacagatcaatgtgtgaaagcatgtggagttgaaaggaatttt |
24038559 |
T |
|
| Q |
136 |
gttggtatttcatctgatgctttctttgagccttacttcacaagcaagctttgttctccatcttgtttctctaagtgtcccaatattgttgaccttttct |
235 |
Q |
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|| || ||||| || ||||| || ||||||| | |||||| ||| |||||||| ||||||||| | || || ||||||||||||||||||| || |
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| T |
24038558 |
gtcggaatttcttccgatgcattgcttgagccacaattcacagccaaactttgttcatcatcttgttaccaaaattgccccaatattgttgacctttact |
24038459 |
T |
|
| Q |
236 |
tcaatttggctgctggagaaggtaa |
260 |
Q |
| |
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|||||||||||||||| |||||||| |
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|
| T |
24038458 |
tcaatttggctgctggggaaggtaa |
24038434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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