View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16011_high_10 (Length: 403)
Name: NF16011_high_10
Description: NF16011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16011_high_10 |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 51772525 - 51772129
Alignment:
| Q |
1 |
ctgtcactgcaaaaggcaaccttctcattggagatgaagaggagaccagctagaggaccagatgtggtggatagataacactgcgaaattttcaacagac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
51772525 |
ctgtcactgcaaaaggcaaccttctcattggagatgaagaggagaccggctagagggccagatgtggtggatagataacactgcgaaattttcaacaggc |
51772426 |
T |
|
| Q |
101 |
tctcgtcctcactcacactaaaataccgcataaacactttctccactccacccacttgaagaatttgagcccctaagctcaattttctcttaattgtttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51772425 |
tctcgtcctcactcacactaaaataccgcataaacactttctccactccacccacttgaagaatttgagcccctaagctcaattttctcttaattgtttc |
51772326 |
T |
|
| Q |
201 |
agaaatgtttgctctaagtcttactgaaatttaagaattatatataataggattagaaacgatcgagtaaatgactatatgaggagttcataaactgata |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
51772325 |
agaaatgtttgctctaagtcttactgaaatttaagaattatatataataggattagaaacgatcgagtaaatgactatacgaggagttcataaactgata |
51772226 |
T |
|
| Q |
301 |
tagatattgcagacaaaaggcatggacttcataaactatatatgcaataacaattggaaacacatctcagtcttacaagggtactcaccatattctt |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
51772225 |
tagatattgcagacaaaaggcatggacttcataaactatatatgcaataacaattggaaacacatctcagtcttacaagggtactcaccatgttctt |
51772129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 51780381 - 51780133
Alignment:
| Q |
1 |
ctgtcactgcaaaaggcaaccttctcattggagatgaagaggagaccagctagaggaccagatgtggtggatagataacactgcgaaattttcaacagac |
100 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| || |||| |||||||| |
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| T |
51780381 |
ctgtcactgcaaaaggcaaccttttcattggagatgaagaggaggccagctagagggccagatgtggtggaaagataacagtgagaaactttcaaca--- |
51780285 |
T |
|
| Q |
101 |
tctcgtcctcactcacactaaaataccgcataaacactttctccactccacccacttgaagaatttgagcccctaagctcaattttctcttaattgtttc |
200 |
Q |
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||| |||||||||||||| ||||||| | ||| |||||||||||||||| |||||||| ||||||||||||||| || ||| | |||||||| |
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| T |
51780284 |
-------ctctctcacactaaaatagtgcataaaaaatttatccactccacccacttaaagaattttagcccctaagctcaacttcctccttattgtttc |
51780192 |
T |
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| Q |
201 |
agaaatgtttgctctaagtcttactgaaatttaagaattatatataataggattagaaa |
259 |
Q |
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|||||||||||||| ||||||| |||||||| ||||||||||| |||||||||||||| |
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| T |
51780191 |
agaaatgtttgctcccagtcttaatgaaatttcagaattatataaaataggattagaaa |
51780133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 4 - 232
Target Start/End: Complemental strand, 51808097 - 51807869
Alignment:
| Q |
4 |
tcactgcaaaaggcaaccttctcattggagatgaagaggagaccagctagaggaccagatgtggtggatagataacactgcgaaattttcaacagactct |
103 |
Q |
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|||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||| | || |||| |
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| T |
51808097 |
tcactgcagaaggcaaccttttcattggagatgaagagcagaccagctagaggaccagatgtggtggatagataacactgtgaaacttttgatagcctct |
51807998 |
T |
|
| Q |
104 |
cgtcctcactcacactaaaataccgcataaacactttctccactccacccacttgaagaatttgagcccctaagctcaattttctcttaattgtttcaga |
203 |
Q |
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| | || ||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||| ||| |
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| T |
51807997 |
ctccttctgtcacactaaaatattgcgtaaacactttctccactccacccatttgaagaatttgagcccctaagctcaaagttctctttattgttttaga |
51807898 |
T |
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| Q |
204 |
aatgtttgctctaagtcttactgaaattt |
232 |
Q |
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|||||||||| || ||| |||||||||| |
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| T |
51807897 |
tatgtttgctccaactctcactgaaattt |
51807869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 4 - 214
Target Start/End: Complemental strand, 51804144 - 51803934
Alignment:
| Q |
4 |
tcactgcaaaaggcaaccttctcattggagatgaagaggagaccagctagaggaccagatgtggtggatagataacactgcgaaattttcaacagactct |
103 |
Q |
| |
|
|||||||| ||||| ||||| ||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||| ||| | || |||| |
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| T |
51804144 |
tcactgcagaaggccaccttttcattggagatgaagaggagaccagatagaggaccggatgtggtggaaagataacactgcgaaacttttgatagcctct |
51804045 |
T |
|
| Q |
104 |
cgtcctcactcacactaaaataccgcataaacactttctccactccacccacttgaagaatttgagcccctaagctcaattttctcttaattgtttcaga |
203 |
Q |
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| | || ||||||||||||||| || |||||| ||||||||||||||||| |||||||||||||||||||||| |||| | ||||| ||||||| ||| |
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| T |
51804044 |
ctccttctctcacactaaaatactgcctaaacattttctccactccacccatttgaagaatttgagcccctaagttcaacgtcctctttattgttttaga |
51803945 |
T |
|
| Q |
204 |
aatgtttgctc |
214 |
Q |
| |
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|||||||||| |
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| T |
51803944 |
tatgtttgctc |
51803934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 51761472 - 51761423
Alignment:
| Q |
55 |
ggaccagatgtggtggatagataacactgcgaaattttcaacagactctc |
104 |
Q |
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||||||||||||||||| |||||||| || |||| ||||||||| ||||| |
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| T |
51761472 |
ggaccagatgtggtggacagataacagtgtgaaactttcaacagcctctc |
51761423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 389
Target Start/End: Complemental strand, 51807751 - 51807718
Alignment:
| Q |
356 |
ggaaacacatctcagtcttacaagggtactcacc |
389 |
Q |
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|||||||||||| ||||||||||||||||||||| |
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| T |
51807751 |
ggaaacacatctaagtcttacaagggtactcacc |
51807718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 7025 - 6775
Alignment:
| Q |
1 |
ctgtcactgcaaaaggcaaccttctcattggagatgaagaggagaccagctaga--ggaccagatgtggtggatagataacactgcgaaattttcaacag |
98 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||| |||||||| || |||||||||||||| |||||||| || |||| |||||||| |
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| T |
7025 |
ctgtcactgcaaaaggcaaccttttcattggagatgaagaggaggccagctaggaggggccagatgtggtggaaagataacagtgagaaactttcaaca- |
6927 |
T |
|
| Q |
99 |
actctcgtcctcactcacactaaaataccgcataaacactttctccactccacccacttgaagaatttgagcccctaagctcaattttctcttaattgtt |
198 |
Q |
| |
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||| |||||||||||||| ||||||| | ||| |||||||||||||||| |||||||| ||||||||||||||| || ||| | |||||| |
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| T |
6926 |
---------ctctctcacactaaaatagtgcataaaaaatttatccactccacccacttaaagaattttagcccctaagctcaacttcctccttattgtt |
6836 |
T |
|
| Q |
199 |
tcagaaatgtttgctctaagtcttactgaaatttaagaattatatataataggattagaaa |
259 |
Q |
| |
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|||||||||||||||| ||||||| |||||||| ||||||||||| |||||||||||||| |
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| T |
6835 |
tcagaaatgtttgctcccagtcttaatgaaatttcagaattatataaaataggattagaaa |
6775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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