View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16011_high_13 (Length: 368)
Name: NF16011_high_13
Description: NF16011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16011_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 11 - 350
Target Start/End: Original strand, 35448543 - 35448882
Alignment:
| Q |
11 |
cacagaaacacaagagagaggacataccagaaaacagagaaacaagatccggaaagctagaacaaatgtttagaaaatccataactgcttcattgtcaga |
110 |
Q |
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| T |
35448543 |
cacagaaacacaagagagaggacataccagaaaacagagaaacaagatccggaaagctagaacaagtgtttagaaaatccataactgcttcattgtcaga |
35448642 |
T |
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| Q |
111 |
atctgagttggactcgacaccagagattggcatagctgaagcatcgcggacatttgagccggtctccacggcatttctatcagcaccagacatgtgagga |
210 |
Q |
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| T |
35448643 |
atctgagttggactcgataccagagattggcatagctgaagcatcgcggacatttgagccggtctccacggcatttctatcagcaccagacatgtgagga |
35448742 |
T |
|
| Q |
211 |
aaacttgaatattcaggttgtactatggccatctgcccattaactccttgctgcaaatccatgtttgagttctgactatgatgcatgcttaaaatatctc |
310 |
Q |
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| T |
35448743 |
aaacttgaatattcaggttgtactatggccatctgcccattaactccttgctgcaaatccatgtttgagttctgactatgatgcatgcttaaaatatctc |
35448842 |
T |
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| Q |
311 |
cgtgagcagacatctcaaccatacgaaatgatgatccacc |
350 |
Q |
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| T |
35448843 |
cgtgagcagacatctcaaccatatgaaatgatgatccacc |
35448882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 134 - 348
Target Start/End: Original strand, 35448891 - 35449108
Alignment:
| Q |
134 |
agattggcatagctgaagcatcgcggacatttgagccggtctccacggcatttctatcagcaccagacatg---tgaggaaaacttgaatattcaggttg |
230 |
Q |
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| T |
35448891 |
agattggcatagctgatgcattcctgacaattgggcaggtctccatgacattttcatcaacaccaaacatgctaggagaagaacttggatattcaggttc |
35448990 |
T |
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| Q |
231 |
tactatggccatctgcccattaactccttgctgcaaatccatgtttgagttctgactatgatgcatgcttaaaatatctccgtgagcagacatctcaacc |
330 |
Q |
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| T |
35448991 |
tgttatggccatccccccattaattccttgttgaaaacccatgttcgagttctgactataatgcatgcttgaaaaatctccatgagcagacatatcaacc |
35449090 |
T |
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| Q |
331 |
atacgaaatgatgatcca |
348 |
Q |
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| T |
35449091 |
atacgaaatggtgatcca |
35449108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 184 - 347
Target Start/End: Original strand, 35440921 - 35441087
Alignment:
| Q |
184 |
tttctatcagcaccagacatgtgagga---aaacttgaatattcaggttgtactatggccatctgcccattaactccttgctgcaaatccatgtttgagt |
280 |
Q |
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|||| |||||||||| ||||||||||| |||||||||| ||||||| ||||| ||| ||||||||||||||| |||| | |||||||||||| |
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| T |
35440921 |
tttccatcagcaccaaacatgtgaggagaaaaacttgaattatcaggtttggatatggtcattcccccattaactccttgttgcatacccatgtttgagt |
35441020 |
T |
|
| Q |
281 |
tctgactatgatgcatgcttaaaatatctccgtgagcagacatctcaaccatacgaaatgatgatcc |
347 |
Q |
| |
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||||| || | ||||||| ||||||||| ||||||||| | |||||||||| |||||||||||| |
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| T |
35441021 |
tctgagtaaaagtcatgcttggaatatctccatgagcagacgtatcaaccataccaaatgatgatcc |
35441087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 350
Target Start/End: Original strand, 35449239 - 35449341
Alignment:
| Q |
248 |
cattaactccttgctgcaaatccatgtttgagttctgactatgatgcatgcttaaaatatctccgtgagcagacatctcaaccatacgaaatgatgatcc |
347 |
Q |
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|||||| |||||| || || ||||||| | ||||||||||| ||||||| || || |||||| |||||||||| |||||||||| ||| |||||||| |
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| T |
35449239 |
cattaattccttgttgaaagcccatgttcgtgttctgactataatgcatggttgaacaatctccttgagcagacacgtcaaccataccaaacgatgatcc |
35449338 |
T |
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| Q |
348 |
acc |
350 |
Q |
| |
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||| |
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| T |
35449339 |
acc |
35449341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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