View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16011_high_16 (Length: 351)

Name: NF16011_high_16
Description: NF16011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16011_high_16
NF16011_high_16
[»] chr2 (3 HSPs)
chr2 (16-140)||(33357226-33357350)
chr2 (253-345)||(33358052-33358143)
chr2 (139-241)||(33357374-33357486)


Alignment Details
Target: chr2 (Bit Score: 96; Significance: 5e-47; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 16 - 140
Target Start/End: Original strand, 33357226 - 33357350
Alignment:
Q  16 aataatcatgatagaaacacactaccatgagagtaagaaactgagtctaaaaagaacnnnnnnncacatgaattgcttgttttcctctccaaatggtgga 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||       | ||||||||||||||||||||||||||||||||||    
T  33357226 aataatcatgatagaaacacactaccatgagagtaagaaactgattctaaaaagaacaaaaaaacccatgaattgcttgttttcctctccaaatggtgga 33357325  T
Q  116 ggcctaaaaaacaacaacacaggaa 140  Q
    |||||||||||||||||||||||||    
T  33357326 ggcctaaaaaacaacaacacaggaa 33357350  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 253 - 345
Target Start/End: Original strand, 33358052 - 33358143
Alignment:
Q  253 ttcaaatgaaactagttcccactcaagaacgagttttctaactatagttatagacgttttaagttgacttatttccaatcattttcatctcac 345  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33358052 ttcaaatgaaactagttcc-actcaataacgagttttctaactatagttatagacgttttaagttgacttatttccaatcattttcatatcac 33358143  T

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Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 139 - 241
Target Start/End: Original strand, 33357374 - 33357486
Alignment:
Q  139 aagttaggaagttgtgatgttacgttaaactttgagacatattagttgtgttcacggagcc----------gatacatggtaagactatgaaatctaata 228  Q
    |||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||          |||||||||||||||||||||||||||||    
T  33357374 aagtaaggaagttgtgatgttacgttaaactttgtgtcatattagttgtgttcacggagccgatacatgtagatacatggtaagactatgaaatctaata 33357473  T
Q  229 tggagaaactatt 241  Q
    |||||||||||||    
T  33357474 tggagaaactatt 33357486  T

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