View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16011_high_17 (Length: 343)
Name: NF16011_high_17
Description: NF16011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16011_high_17 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 343
Target Start/End: Complemental strand, 39081357 - 39081032
Alignment:
| Q |
18 |
gggataacatacttctgcacttgttggaccactgattcaggatcttcaacatgatgagaagaataaatcaaaactggagcaagaagcaagaaatggaaca |
117 |
Q |
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| T |
39081357 |
gggataacatacttctgcacttgttggaccactgattcaggatcttcaacatgatgagaagaataaatcaaaactggagcaagaagcaagaaatggaaca |
39081258 |
T |
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| Q |
118 |
ctagtatggtagcaaatgccatattttttggaagaaattttttcttaagtaggaaacttaaagagtagtgacttgttctataagagtgatataattagct |
217 |
Q |
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| T |
39081257 |
ctagtatggtagcaaatgccatattttttggaagaaattttttcttaagtaggaaacttaaagagtagtgacttgttctataagagtgatataattagct |
39081158 |
T |
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| Q |
218 |
tatatagacaactaactgtggtgagaggatcctgaatttatgatttaaaaaatatgtttatcaaatgttatttgtcaatttagggaccctatagttaatt |
317 |
Q |
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| T |
39081157 |
tatatagacaactaactgtggtgagaggatcctgaatttattatttaaaaaatatgtttatcaaatgttatttgtgaatttagggaccctatagttaatt |
39081058 |
T |
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| Q |
318 |
ccctatatatgaggcatctttcttcc |
343 |
Q |
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| T |
39081057 |
ccctatatatgaggcatctttcttcc |
39081032 |
T |
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