View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16011_high_20 (Length: 296)

Name: NF16011_high_20
Description: NF16011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16011_high_20
NF16011_high_20
[»] chr8 (1 HSPs)
chr8 (1-296)||(30019960-30020255)


Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 30019960 - 30020255
Alignment:
Q  1 tcatcaaggaatttttccacttatttttagacacgcgtgcttataagttatataagctagcatatgcgtgttaccaaacagacccttggtaagttgtaaa 100  Q
    |||| ||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30019960 tcatgaagaaatttttccacttatttttagacatgcgagcttataagttatataagctagcatatgcgtgttaccaaccagacccttggtaagttgtaaa 30020059  T
Q  101 ttagttctaaattaactatattttggtattaccccagtttttatttccagcgaagccatatggcactataataccatgaacctgtttcccatgagtcata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30020060 ttagttctaaattaactatattttggtattaccccagtttttatttccaacgaagccatatggcactataataccatgaacctgttttccatgagtcata 30020159  T
Q  201 gctaaagtgttaaaacaaatgctcaaaacaaggctaagggaatagacatttgtcttgtaatgtgtcttaagcaatgaagtgaagtgttttaaacct 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30020160 gctaaagtgttaaaacaaatgctcaaaacaaggctaagggaatagacatttgtcttgtaatgtgtcttaagcaatgaagtgaagtgttttaaacct 30020255  T

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