View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16011_high_25 (Length: 250)
Name: NF16011_high_25
Description: NF16011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16011_high_25 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 38808696 - 38808457
Alignment:
| Q |
1 |
gctgaatagaaaattccgtggacaataacaatttccaactaattatgatattttgttacagtcaactacaattgttggaacttgaaagtagaaggaaaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38808696 |
gctgaatagaaaattccgtggacaataacaatttccaactaattatgatcttttgttacagtcaactacaattgttggaacttgaaagtagaaggaaaca |
38808597 |
T |
|
| Q |
101 |
aaaggaaaagttgnnnnnnngagacaaactggtaccataaccaagtaaacaattccttaaacaaaaatattatattatcatctgtccagaagctagcatc |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38808596 |
aaaggaaaagttgaaaaaaagagacaaactggtaccataaccaagtaaacaattccttaaacaaaaatattatattatcatctgtccagaagctagcatc |
38808497 |
T |
|
| Q |
201 |
atatcaggtttttggaatcatgtattgtaagacatctgtg |
240 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38808496 |
atatcatgtttttggaatcatgtattgtaagacatctgtg |
38808457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University