View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16011_high_26 (Length: 249)
Name: NF16011_high_26
Description: NF16011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16011_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 40718647 - 40718875
Alignment:
| Q |
1 |
ataaatcaaagtttccaaagtcgtatgaatgacatatataaatcacattcatgttccctcaactatatggcaaagtgacaaaacatatatagcacaaaac |
100 |
Q |
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| T |
40718647 |
ataaatcaaagtctccaaagtcgtatgaatgacatatataaatcacattcatgttccctcaactatatggcaaagtgacaaaacatatatagcacaaaac |
40718746 |
T |
|
| Q |
101 |
aaagagtcataatcagtcacaacattttccatttctgtttgaaggaattgcagtagctagcctactagtggaaaaatttaattagaatggtcatttgtgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40718747 |
aaagagtcataatcagtcacaacattttccatttctgtt--------------tagctagcctactagtggaaaaatttaattagaatggtcatttgtgt |
40718832 |
T |
|
| Q |
201 |
atatactatagttgacctccatatcagcccccacttcatttca |
243 |
Q |
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| T |
40718833 |
acatactatagttgacctccatatcagcccccacttcatttca |
40718875 |
T |
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