View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16011_high_28 (Length: 245)
Name: NF16011_high_28
Description: NF16011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16011_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 38808828 - 38809058
Alignment:
| Q |
1 |
tcttttaattgtatcagtcacatttatatgtaatttacaaattaggctgatatggacatcatacatttaaatggaacatcatacacactgctacactttc |
100 |
Q |
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| T |
38808828 |
tcttttaattgtatcagtcacatttatatgtaatttacaaattaggctgatatggacatcatacatttaaatggaacatcatacacattgctacactttc |
38808927 |
T |
|
| Q |
101 |
attttattatagttttttgtttgacttaatttatagatatgcatcttaggagaatattccaattaacatcaatagaaaatattgcaaaatcaaaaaagcc |
200 |
Q |
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| T |
38808928 |
attttattatagttttttgtttgacttaatttataaatatgcatcttaggagaatattccaattaacatcaatagaaaatattgcaaaatcaaaaaagcc |
38809027 |
T |
|
| Q |
201 |
atcaaattctgtttcaatctaagaactatat |
231 |
Q |
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| T |
38809028 |
atcaaattctgtttcaatctaagaactatat |
38809058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 38821928 - 38821997
Alignment:
| Q |
137 |
atatgcatcttaggagaatattccaattaacatcaatagaaaatattgcaaaatcaaaaaagccatcaaa |
206 |
Q |
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| T |
38821928 |
atatgcatcttagaagaatattccaattgacatcaataacaaagattgcaaaatttaaaaagccaccaaa |
38821997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 198
Target Start/End: Complemental strand, 35521775 - 35521721
Alignment:
| Q |
144 |
tcttaggagaatattccaattaacatcaatagaaaatattgcaaaatcaaaaaag |
198 |
Q |
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|||| |||||||||||||||| |||| |||| ||||||| |||||||||||||| |
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| T |
35521775 |
tctttggagaatattccaattgacattgatagcaaatatttcaaaatcaaaaaag |
35521721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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