View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16011_high_33 (Length: 236)
Name: NF16011_high_33
Description: NF16011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16011_high_33 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 40718414 - 40718634
Alignment:
| Q |
16 |
aatacaaatgaatggaaaaatttgcaggaccacaaagtgttacatcataaatttaaatttaatgtgatagcaaattttccctcatttagaagcctttgga |
115 |
Q |
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| T |
40718414 |
aatacaaatgaatggaaaaatttgcaggaccacaaagtgttacatcataaatttaaatttaatgtgatagcaagttttccctcatttagaagcctttgga |
40718513 |
T |
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| Q |
116 |
gccttgaagaaatcatagctatcttatatctatctttgtttgtggtacaactacaagagtttcaagcttttaaggaactctatttaccccacaccttcat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40718514 |
gccttgaagaaatcatagctatcttatatctatctttgtttgtggtacaactacaagagtttcaagcttttaaggaactctatttaccccacaccttcat |
40718613 |
T |
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| Q |
216 |
gctttgccacaatttgatgcc |
236 |
Q |
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||||||||||||||||||||| |
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| T |
40718614 |
gctttgccacaatttgatgcc |
40718634 |
T |
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