View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16011_high_5 (Length: 504)
Name: NF16011_high_5
Description: NF16011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16011_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 8 - 482
Target Start/End: Complemental strand, 53425107 - 53424632
Alignment:
| Q |
8 |
aggagcagagagaaatacagttattaatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggt |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53425107 |
aggatcagagagaaatacagttattaatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggt |
53425008 |
T |
|
| Q |
108 |
agtaacaaagttatcaaggtacaatctatagcgctctgcggtatatcaannnnnnnnnnnnnnnnnnnnnnnnncaatgatatatttctcatgtttgata |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
53425007 |
agtaacaaagttatcaaggtacaatctatagcgctctgcggtatatcaatttattttttaatttttttaattttcaatgatatatttctcatgtttgata |
53424908 |
T |
|
| Q |
208 |
attgttattgttaagggtcaagccataaatttcacccctctttcaaaatctccccattatccactggtaaccggcgaggctgtcaagacaactactgcag |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53424907 |
attgttattgttaagggtcaagccataaatttcacccctctttcaaaatctccccattatccactggtaaccggcgaggctgtcaagacaactactgcag |
53424808 |
T |
|
| Q |
308 |
atttagctgaagcaaggtacgtaagcatgcataaccataacaataaattaacttaaacttgtttgctgggcataattaatc-nnnnnnnttattattgtt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
53424807 |
atttagctgaagcaaggtacgtaagcatgcataaccataacaattaattaacttaaacttgtttgttgggcataattaatcaaaaaaaattattattgtt |
53424708 |
T |
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| Q |
407 |
tgttaaatgcaggatgtgtcacccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatggc |
482 |
Q |
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| T |
53424707 |
tgttaaatgcaggatgtgtcacccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatggc |
53424632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 221 - 327
Target Start/End: Original strand, 48373647 - 48373753
Alignment:
| Q |
221 |
agggtcaagccataaatttcacccctctttcaaaatctccccattatccactggtaaccggcgaggctgtcaagacaactactgcagatttagctgaagc |
320 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||| || |||||||| || |||| || || ||| |||||||||||||| || ||| ||||||| |
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| T |
48373647 |
agggtcaagccataaatttctcccctctttcaaaatctgccgattatccattgataactggaaagtctgctaagacaactactgctgacttaactgaagc |
48373746 |
T |
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| Q |
321 |
aaggtac |
327 |
Q |
| |
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||||||| |
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| T |
48373747 |
aaggtac |
48373753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 48372459 - 48372558
Alignment:
| Q |
31 |
ttaatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaacaaagttatcaaggtaca |
130 |
Q |
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| T |
48372459 |
ttaatgatgcaccttggatattaacggttgctgccaccactattgaccgtgactttcagtccaatgttgtcttgggtaataacaaagttgtcaaggtaca |
48372558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 23 - 130
Target Start/End: Complemental strand, 26097609 - 26097502
Alignment:
| Q |
23 |
tacagttattaatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaacaaagttatc |
122 |
Q |
| |
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||||||| ||||||| ||||||||||| | || ||||| ||||| || || |||||||| ||||||||||| |||| ||||||| |||||||||| || |
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| T |
26097609 |
tacagttgttaatgacgctccttggatactaacggttgctgccactaccattgatcgtgactttcagtccaatgttgtcttgggtaataacaaagttgtc |
26097510 |
T |
|
| Q |
123 |
aaggtaca |
130 |
Q |
| |
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|||||||| |
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|
| T |
26097509 |
aaggtaca |
26097502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 23 - 142
Target Start/End: Complemental strand, 53309082 - 53308963
Alignment:
| Q |
23 |
tacagttattaatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaacaaagttatc |
122 |
Q |
| |
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||||||| ||||||| ||||||||||| || ||||||| |||||| || |||||| ||||| | |||||||| ||||||| |||||| ||||||||| |
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| T |
53309082 |
tacagttgttaatgacgctccttggatattaactgttgtagccactaccatcgattgtgatatgcagtccaacgttgttttaggtagtggcaaagttatt |
53308983 |
T |
|
| Q |
123 |
aaggtacaatctatagcgct |
142 |
Q |
| |
|
||||||||| |||| |||| |
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| T |
53308982 |
gaggtacaatttataacgct |
53308963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 423 - 481
Target Start/End: Complemental strand, 53431843 - 53431785
Alignment:
| Q |
423 |
tgtcacccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatgg |
481 |
Q |
| |
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|||||||||||||||||| ||| ||| ||||||||||||||||||||||| |||||||| |
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| T |
53431843 |
tgtcacccaaattcattaaataagaaaaaagtcaaaggaaagattgtcatttgtgatgg |
53431785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 132
Target Start/End: Complemental strand, 53432241 - 53432124
Alignment:
| Q |
15 |
gagagaaatacagttattaatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaaca |
114 |
Q |
| |
|
||||||| |||| ||| |||||||||||||||||| || || |||| ||||| ||||| || ||||| |||||||||| |||| ||||||| ||| |
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| T |
53432241 |
gagagaagtacacttactaatgatgctccttggatattaaccgttggtgccacaactattgaccgtgaatttcagtccaacgttgtcttgggtaataaag |
53432142 |
T |
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| Q |
115 |
aagttatcaaggtacaat |
132 |
Q |
| |
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|||||||||||||||||| |
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| T |
53432141 |
aagttatcaaggtacaat |
53432124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 429 - 480
Target Start/End: Complemental strand, 26096577 - 26096526
Alignment:
| Q |
429 |
ccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatg |
480 |
Q |
| |
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|||| ||||||||| | ||| ||||||||||||||||||||||||||||||| |
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| T |
26096577 |
ccaagttcattagacaagaaaaaagtcaaaggaaagattgtcatatgtgatg |
26096526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 137
Target Start/End: Complemental strand, 53320858 - 53320744
Alignment:
| Q |
23 |
tacagttattaatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaacaaagttatc |
122 |
Q |
| |
|
||||||| |||||||||||| ||||| || || |||| |||||| || || || |||||||| ||||| ||| |||| ||||||| | |||||| ||| |
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| T |
53320858 |
tacagtttctaatgatgctccctggatattaaccgttggagccacaacaattgaccgtgatctccagtctaatgttgtcttgggtaatggcaaagtgatc |
53320759 |
T |
|
| Q |
123 |
aaggtacaatctata |
137 |
Q |
| |
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||||||||| ||||| |
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|
| T |
53320758 |
aaggtacaaactata |
53320744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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