View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16011_high_8 (Length: 426)
Name: NF16011_high_8
Description: NF16011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16011_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 71 - 259
Target Start/End: Complemental strand, 30032301 - 30032113
Alignment:
| Q |
71 |
actaataaacataagagaatctagattcaatatttccattgtcattttcttctgtaatattcgaaaacaaattttgaaaatgtcatgacgttgttttcat |
170 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30032301 |
actaataaacataagagaatctagattcaatatttccattgtcattttcttctgtaatatttgaaaacaaattttgaaaatgtcatgacgttgttttcat |
30032202 |
T |
|
| Q |
171 |
tgtttctagaaatgtttttccctgtcctagcttgtcatccatctgtcacaattatttattaggcggatcttccatctctatgttcacaa |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30032201 |
tgtttctagaaatgtttttccctgtcctagcttgtcatccatctgtcacaattatttattaggcggatcttccatctctatgttcacaa |
30032113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 410
Target Start/End: Complemental strand, 30031998 - 30031968
Alignment:
| Q |
380 |
ttacaagtgcttagcctttaaaaggaggtct |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
30031998 |
ttacaagtgcttagcctttaaaaggaggtct |
30031968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 410
Target Start/End: Complemental strand, 30043221 - 30043191
Alignment:
| Q |
380 |
ttacaagtgcttagcctttaaaaggaggtct |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
30043221 |
ttacaagtgcttagcctttaaaaggaggtct |
30043191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University