View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16011_low_12 (Length: 374)

Name: NF16011_low_12
Description: NF16011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16011_low_12
NF16011_low_12
[»] chr2 (3 HSPs)
chr2 (239-358)||(1227476-1227597)
chr2 (11-60)||(1227423-1227472)
chr2 (90-142)||(24002970-24003022)
[»] chr7 (4 HSPs)
chr7 (73-174)||(46857875-46857976)
chr7 (73-174)||(23846056-23846157)
chr7 (74-174)||(39606029-39606128)
chr7 (92-173)||(24688491-24688572)
[»] scaffold0044 (1 HSPs)
scaffold0044 (73-174)||(22241-22342)
[»] chr5 (5 HSPs)
chr5 (73-174)||(31251317-31251417)
chr5 (73-174)||(11077230-11077331)
chr5 (73-157)||(14622880-14622964)
chr5 (73-174)||(15579444-15579547)
chr5 (73-173)||(26228384-26228484)
[»] chr3 (3 HSPs)
chr3 (79-174)||(3330398-3330493)
chr3 (74-158)||(6748919-6749007)
chr3 (73-166)||(817892-817986)
[»] chr8 (2 HSPs)
chr8 (74-130)||(34968031-34968087)
chr8 (73-109)||(22998046-22998082)
[»] scaffold0069 (1 HSPs)
scaffold0069 (73-174)||(19121-19221)
[»] scaffold0006 (1 HSPs)
scaffold0006 (73-133)||(92862-92922)
[»] chr6 (2 HSPs)
chr6 (73-158)||(12522656-12522743)
chr6 (73-166)||(34188357-34188452)
[»] chr4 (2 HSPs)
chr4 (90-174)||(52245513-52245597)
chr4 (73-174)||(32105331-32105433)
[»] chr1 (2 HSPs)
chr1 (91-166)||(33473879-33473954)
chr1 (73-166)||(32908175-32908271)


Alignment Details
Target: chr2 (Bit Score: 99; Significance: 9e-49; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 239 - 358
Target Start/End: Original strand, 1227476 - 1227597
Alignment:
Q  239 gtttagtcaattttgatagacatatacgtcactgattgtgttttcaggttggacctttgattaacaaatttac--atcttggggttcatgaattaaaatc 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||  ||||||||||||||||||||    
T  1227476 gtttagtcaattttgatagacatatacgtcactgattgtgttttcaggttggacctttgatttacaaatttacatatcgcggggttcatgaattaaaatc 1227575  T
Q  337 ctaatttgttgcaacttgtaac 358  Q
    ||||||||||||||||||||||    
T  1227576 ctaatttgttgcaacttgtaac 1227597  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 1227423 - 1227472
Alignment:
Q  11 cacagatttccaaattcaaataaaaaggcatgcttttctttttattccac 60  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1227423 cacagatttccaatttcaaataaaaaggcatgcttttctttttattccac 1227472  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 24002970 - 24003022
Alignment:
Q  90 tgacataaaaaatgaatagaaaacagtccaaaagatggaatgtcctgcagatt 142  Q
    |||||||||||| ||||||||||||||||||||| || |||||  ||||||||    
T  24002970 tgacataaaaaaggaatagaaaacagtccaaaagttgaaatgttttgcagatt 24003022  T

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Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 73 - 174
Target Start/End: Complemental strand, 46857976 - 46857875
Alignment:
Q  73 ataagccaagagtccagtgacataaaaaatgaatagaaaacagtccaaaagatggaatgtcctgcagatttcggtctatgtcaggtactcatatttatta 172  Q
    |||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||| |||||    
T  46857976 ataagccaagagtccaatgacataaaaaaggaatagaaaacagtctaaaagatggaatgtcctgcagatttcgatctatgtcaggtcctcatatatatta 46857877  T
Q  173 tt 174  Q
    ||    
T  46857876 tt 46857875  T

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Target: chr7; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 73 - 174
Target Start/End: Original strand, 23846056 - 23846157
Alignment:
Q  73 ataagccaagagtccagtgacataaaaaatgaatagaaaacagtccaaaagatggaatgtcctgcagatttcggtctatgtcaggtactcatatttatta 172  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||| || |||||||||||||||||||| |||||    
T  23846056 ataaaccaagagtccagtgacataaaaaaggaatagaaaacagtccaaaagatggaatgtcctatagattccgatctatgtcaggtactcatatatatta 23846155  T
Q  173 tt 174  Q
    ||    
T  23846156 tt 23846157  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 74 - 174
Target Start/End: Complemental strand, 39606128 - 39606029
Alignment:
Q  74 taagccaagagtccagtgacataaaaaatgaatagaaaacagtccaaaagatggaatgtcctgcagatttcggtctatgtcaggtactcatatttattat 173  Q
    |||| |||||||||||||||||||||| |||||||| ||||||||||||| || |||||| |||||||| | ||||||||| || |||||||| ||||||    
T  39606128 taaggcaagagtccagtgacataaaaa-tgaatagacaacagtccaaaagttgaaatgtcttgcagattccagtctatgtcgggaactcatatatattat 39606030  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 92 - 173
Target Start/End: Complemental strand, 24688572 - 24688491
Alignment:
Q  92 acataaaaaatgaatagaaaacagtccaaaagatggaatgtcctgcagatttcggtctatgtcaggtactcatatttattat 173  Q
    |||||||||| ||||||||| ||||||||||||||||||||| || ||||| | || |||||||||| ||||| | ||||||    
T  24688572 acataaaaaaggaatagaaagcagtccaaaagatggaatgtcttggagattccagtttatgtcaggtgctcatgtatattat 24688491  T

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Target: scaffold0044 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 73 - 174
Target Start/End: Complemental strand, 22342 - 22241
Alignment:
Q  73 ataagccaagagtccagtgacataaaaaatgaatagaaaacagtccaaaagatggaatgtcctgcagatttcggtctatgtcaggtactcatatttatta 172  Q
    |||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |  |||||||||||||||||||| |||||    
T  22342 ataagccaagagtcgagtgacataaaaaaggaatagaaaatagtccaaaagatggaatgtcctgcagattccaatctatgtcaggtactcatatatatta 22243  T
Q  173 tt 174  Q
    ||    
T  22242 tt 22241  T

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Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 73 - 174
Target Start/End: Original strand, 31251317 - 31251417
Alignment:
Q  73 ataagccaagagtccagtgacataaaaaatgaatagaaaacagtccaaaagatggaatgtcctgcagatttcggtctatgtcaggtactcatatttatta 172  Q
    ||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||| ||||||||| | ||||||||||||||||||||||| |||||    
T  31251317 ataagccaagagtccagtgacataaaaag-gaatagaaaacaatccaaaagatggaatatcctgcagactccggtctatgtcaggtactcatatatatta 31251415  T
Q  173 tt 174  Q
    ||    
T  31251416 tt 31251417  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 73 - 174
Target Start/End: Original strand, 11077230 - 11077331
Alignment:
Q  73 ataagccaagagtccagtgacataaaaaatgaatagaaaacagtccaaaagatggaatgtcctgcagatttcggtctatgtcaggtactcatatttatta 172  Q
    ||||| |||||||||| |||||||||||| |||||||||||| |||||||||| ||||||| |||||||| | |||||||| |||||||||||| |||||    
T  11077230 ataaggcaagagtccactgacataaaaaaggaatagaaaacaatccaaaagatagaatgtcttgcagattccagtctatgttaggtactcatatatatta 11077329  T
Q  173 tt 174  Q
    ||    
T  11077330 tt 11077331  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 73 - 157
Target Start/End: Original strand, 14622880 - 14622964
Alignment:
Q  73 ataagccaagagtccagtgacataaaaaatgaatagaaaacagtccaaaagatggaatgtcctgcagatttcggtctatgtcagg 157  Q
    ||||| |||| |||||||||||||||||| ||| |||||||| || ||||||||||||||| |||||||| | ||||||||||||    
T  14622880 ataaggcaagtgtccagtgacataaaaaaggaacagaaaacaatctaaaagatggaatgtcttgcagattccagtctatgtcagg 14622964  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 73 - 174
Target Start/End: Original strand, 15579444 - 15579547
Alignment:
Q  73 ataagccaagagtccagtgacataaaaaatgaatagaaaacagtcc-aaaagatggaatgtcctgcagatttcggtctatgtc--aggtactcatattta 169  Q
    ||||| ||||||||||  ||||||||||| |||||||||||||||| |||| |||||||||| | |||||| |||||||||||  |||||||||||| ||    
T  15579444 ataagacaagagtccaaagacataaaaaa-gaatagaaaacagtccaaaaaaatggaatgtcttacagattccggtctatgtcagaggtactcatatata 15579542  T
Q  170 ttatt 174  Q
    |||||    
T  15579543 ttatt 15579547  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 73 - 173
Target Start/End: Complemental strand, 26228484 - 26228384
Alignment:
Q  73 ataagccaagagtccagtgacataaaaaatgaatagaaaacagtccaaaagatggaatgtcctgcagatttcggtctatgtcaggtactcatatttatta 172  Q
    ||||| |||||||||| | |||||||||| ||||||||||||||  ||||| || |||||| |||| ||||  || |||||||||| ||||||| |||||    
T  26228484 ataaggcaagagtccaataacataaaaaaggaatagaaaacagtttaaaagttgaaatgtcttgcatattttagtttatgtcaggtgctcatatatatta 26228385  T
Q  173 t 173  Q
    |    
T  26228384 t 26228384  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 174
Target Start/End: Original strand, 3330398 - 3330493
Alignment:
Q  79 caagagtccagtgacataaaaaatgaatagaaaacagtccaaaagatggaatgtcctgcagatttcggtctatgtcaggtactcatatttattatt 174  Q
    ||||||||||  ||||||||||| |||||||||  |||| ||||||||||||||| | |||||| | ||||||||||||||||||||| |||||||    
T  3330398 caagagtccaaagacataaaaaaggaatagaaagtagtctaaaagatggaatgtcttacagattccagtctatgtcaggtactcatatatattatt 3330493  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 158
Target Start/End: Complemental strand, 6749007 - 6748919
Alignment:
Q  74 taagccaagagtccagtgacataaaaaat--gaatagaaaacagtccaaaaga--tggaatgtcctgcagatttcggtctatgtcaggt 158  Q
    |||| |||||||||| ||||||||||||   |||||||| ||||||||| |||  ||||||| | ||||||||| ||||||||||||||    
T  6749007 taaggcaagagtccaatgacataaaaaaaaggaatagaagacagtccaacagagttggaatggcttgcagattttggtctatgtcaggt 6748919  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 166
Target Start/End: Original strand, 817892 - 817986
Alignment:
Q  73 ataagccaagagtccagtgacataaaaaatgaatagaaaacagtccaaaaga--tggaatgtcctgcagatttcggtctatgtcaggtactcatat 166  Q
    ||||||||||||||||  || |||||||  |||||||| ||||| ||| |||  |||| |||| |||||||| | ||||||||||||| |||||||    
T  817892 ataagccaagagtccaacgaaataaaaag-gaatagaagacagttcaacagagttggagtgtcttgcagattccagtctatgtcaggtgctcatat 817986  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 34968087 - 34968031
Alignment:
Q  74 taagccaagagtccagtgacataaaaaatgaatagaaaacagtccaaaagatggaat 130  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  34968087 taaggcaagagtccagtgacataaaaaaggaatagaaaacagtccaaaagttggaat 34968031  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 22998046 - 22998082
Alignment:
Q  73 ataagccaagagtccagtgacataaaaaatgaataga 109  Q
    |||||||||||||||| |||||||||||| |||||||    
T  22998046 ataagccaagagtccaatgacataaaaaaggaataga 22998082  T

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Target: scaffold0069 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 73 - 174
Target Start/End: Original strand, 19121 - 19221
Alignment:
Q  73 ataagccaagagtccagtgacataaaaaatgaatagaaaacagtccaaaagatggaatgtcctgcagatttcggtctatgtcaggtactcatatttatta 172  Q
    ||||| |||||||||||| |||||| ||||||||||||| || |||||||| ||||||||| |||| ||| |||||||| ||  || ||||||| |||||    
T  19121 ataaggcaagagtccagttacataagaaatgaatagaaagcaatccaaaagttggaatgtcttgca-attccggtctatatcgagtgctcatatatatta 19219  T
Q  173 tt 174  Q
    ||    
T  19220 tt 19221  T

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Target: scaffold0006 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 92862 - 92922
Alignment:
Q  73 ataagccaagagtccagtgacataaaaaatgaatagaaaacagtccaaaagatggaatgtc 133  Q
    ||||| ||||||||||||| ||||| |||||||||| ||||| |||||||| |||||||||    
T  92862 ataaggcaagagtccagtggcataagaaatgaataggaaacaatccaaaagttggaatgtc 92922  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 73 - 158
Target Start/End: Complemental strand, 12522743 - 12522656
Alignment:
Q  73 ataagccaagagtccagtgacataaaaaatgaatagaaaacagtccaaaaga--tggaatgtcctgcagatttcggtctatgtcaggt 158  Q
    ||||| |||||||||| |||||||||||| |||||||| ||||||||| |||  ||||||| | |||| ||| | |||||||||||||    
T  12522743 ataaggcaagagtccaatgacataaaaaaagaatagaagacagtccaacagagttggaatgacttgcaaattccagtctatgtcaggt 12522656  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 166
Target Start/End: Original strand, 34188357 - 34188452
Alignment:
Q  73 ataagccaagagtccagtgacataaaaaatgaatagaaaacagtcca--aaagatggaatgtcctgcagatttcggtctatgtcaggtactcatat 166  Q
    ||||| ||||| |||| |||||||||||| |||||||| ||||||||  |||| | ||||||| |||||||| |  |||||||||| | |||||||    
T  34188357 ataaggcaagactccaatgacataaaaaaggaatagaagacagtccaacaaagtttgaatgtcttgcagattccaatctatgtcagatgctcatat 34188452  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 90 - 174
Target Start/End: Complemental strand, 52245597 - 52245513
Alignment:
Q  90 tgacataaaaaatgaatagaaaacagtccaaaagatggaatgtcctgcagatttcggtctatgtcaggtactcatatttattatt 174  Q
    |||||||||||| ||| ||||||| || |||||| ||||||||| || ||||| |  ||||||||||||| |||||| |||||||    
T  52245597 tgacataaaaaaggaacagaaaacggttcaaaagttggaatgtcttgtagattccaatctatgtcaggtattcatatatattatt 52245513  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 174
Target Start/End: Original strand, 32105331 - 32105433
Alignment:
Q  73 ataagccaagagtccagtgacataaaaaatgaatagaaaacagtccaaaaga--tggaatgtcctgcagatttcggtctatgtcaggtactcatatttat 170  Q
    ||||||||||||||||  ||||||||||  |||||||| ||||| ||| |||  |||| |||| |||||||| |  |||||||||||| ||||||| |||    
T  32105331 ataagccaagagtccaacgacataaaaag-gaatagaagacagttcaatagagttggagtgtcttgcagattccattctatgtcaggtgctcatatatat 32105429  T
Q  171 tatt 174  Q
    ||||    
T  32105430 tatt 32105433  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 33473954 - 33473879
Alignment:
Q  91 gacataaaaaatgaatagaaaacagtccaaaagatggaatgtcctgcagatttcggtctatgtcaggtactcatat 166  Q
    ||||| ||||| |||||||||||||| |||||| ||||||||| |||| ||| | |||||||||| || |||||||    
T  33473954 gacatgaaaaaggaatagaaaacagttcaaaagttggaatgtcttgcaaattccagtctatgtcaagttctcatat 33473879  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 166
Target Start/End: Complemental strand, 32908271 - 32908175
Alignment:
Q  73 ataagccaagagtccagtgacataaaaaatg-aatagaaaacagtccaaaaga--tggaatgtcctgcagatttcggtctatgtcaggtactcatat 166  Q
    ||||| |||||||| | |||||||||||| | ||||||| |||||||||  ||  ||||||| | |||||||| ||||||||||||||| |||||||    
T  32908271 ataaggcaagagtcgaatgacataaaaaaaggaatagaagacagtccaacggagttggaatgacttgcagattccggtctatgtcaggtgctcatat 32908175  T

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