View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16011_low_14 (Length: 366)
Name: NF16011_low_14
Description: NF16011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16011_low_14 |
 | |
|
| [»] chr2 (4 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 16 - 366
Target Start/End: Original strand, 5829152 - 5829496
Alignment:
| Q |
16 |
atgaataaagactatcaattattgattcaaatttgctaaatattaaaatgctgaaatcaatatcttttttacaatttaatttgaataaccaatatgaata |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5829152 |
atgaataaagactatcaattattgattcaaatttgctaaatattaaaatgctgaaatcaatatcttttttacaatttaatttgaataaccaatat----- |
5829246 |
T |
|
| Q |
116 |
tctataagaagctatgagtgatagactaatcaacagaaacaataaaccagttttaccaattcccttagaatgcactttctcagatgtagaagatcagagg |
215 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5829247 |
-ctctaagaagttatgagtgatagactaatcaacagaaacactaaaccagttttaccaattcccttagaatgcactttctcggatgtagaagatcagagg |
5829345 |
T |
|
| Q |
216 |
aaccgatattggaagtagaaaatagaaatatcttatgatgcacttgaatgaagagctactaatgaagcataaacaccatcagtaatcctcatcaactcat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5829346 |
aaccgatattggaagtagaaaatagaaatatcttatgatgcacttgaatgaagagctactaatgaagcataaacaccatcagtaatcctcatcaactcat |
5829445 |
T |
|
| Q |
316 |
catgtcttcccttttcagccaccgccccatttttaattaccgctatagtat |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5829446 |
catgtcttcccttttcagccaccgccccatttttaattaccgctatagtat |
5829496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 240 - 366
Target Start/End: Complemental strand, 5769078 - 5768952
Alignment:
| Q |
240 |
gaaatatcttatgatgcacttgaatgaagagctactaatgaagcataaacaccatcagtaatcctcatcaactcatcatgtcttcccttttcagccaccg |
339 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||| |
|
|
| T |
5769078 |
gaaatatcttatgatgcgcttgaatgaagagctactaatgaagcataaacaccatcagtaatcttcatcaacacttcatgtcttcccttttcagccacca |
5768979 |
T |
|
| Q |
340 |
ccccatttttaattaccgctatagtat |
366 |
Q |
| |
|
||||||||||||| || |||||||||| |
|
|
| T |
5768978 |
ccccatttttaatcacggctatagtat |
5768952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 240 - 366
Target Start/End: Complemental strand, 27562934 - 27562808
Alignment:
| Q |
240 |
gaaatatcttatgatgcacttgaatgaagagctactaatgaagcataaacaccatcagtaatcctcatcaactcatcatgtcttcccttttcagccaccg |
339 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||| |
|
|
| T |
27562934 |
gaaatatcttatcatgcacttgaatgaaaagctactaatgaagcataaacaccatcagtaatcttcatcaacacttcatgtcttcccttttcagccacct |
27562835 |
T |
|
| Q |
340 |
ccccatttttaattaccgctatagtat |
366 |
Q |
| |
|
|||| |||||||| || |||||||||| |
|
|
| T |
27562834 |
ccccgtttttaatcacggctatagtat |
27562808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 252 - 366
Target Start/End: Original strand, 22142858 - 22142972
Alignment:
| Q |
252 |
gatgcacttgaatgaagagctactaatgaagcataaacaccatcagtaatcctcatcaactcatcatgtcttcccttttcagccaccgccccatttttaa |
351 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||| | |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
22142858 |
gatgcacttgaatgaaaagctactaatgaagcataaacaccaacagtaatcttcatcaacacttcatgtcttcccttttcagccacctccccatttttaa |
22142957 |
T |
|
| Q |
352 |
ttaccgctatagtat |
366 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
22142958 |
ttacggctatagtat |
22142972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 231 - 366
Target Start/End: Original strand, 29326875 - 29327010
Alignment:
| Q |
231 |
tagaaaatagaaatatcttatgatgcacttgaatgaagagctactaatgaagcataaacaccatcagtaatcctcatcaactcatcatgtcttccctttt |
330 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||| |
|
|
| T |
29326875 |
tagaaagtagaaatatcttatgatgcagttgaatgaagagctactaatgaagcataaacaccatgagtattgttcatcaactcatcatgtcttccctttt |
29326974 |
T |
|
| Q |
331 |
cagccaccgccccatttttaattaccgctatagtat |
366 |
Q |
| |
|
|||| ||| ||||||||| ||||| |||||||||| |
|
|
| T |
29326975 |
cagcaaccatcccattttttattactgctatagtat |
29327010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 252 - 366
Target Start/End: Original strand, 38508487 - 38508601
Alignment:
| Q |
252 |
gatgcacttgaatgaagagctactaatgaagcataaacaccatcagtaatcctcatcaactcatcatgtcttcccttttcagccaccgccccatttttaa |
351 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||| | |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38508487 |
gatgcacttgaatgaaaagctactaatgaagcataaacaccaacagtaatcttcatcaacacttcatgtcttcccttttcagccacctccccatttttaa |
38508586 |
T |
|
| Q |
352 |
ttaccgctatagtat |
366 |
Q |
| |
|
| || |||||||||| |
|
|
| T |
38508587 |
tcacggctatagtat |
38508601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 240 - 366
Target Start/End: Complemental strand, 33815371 - 33815245
Alignment:
| Q |
240 |
gaaatatcttatgatgcacttgaatgaagagctactaatgaagcataaacaccatcagtaatcctcatcaactcatcatgtcttcccttttcagccaccg |
339 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||| ||||||| |
|
|
| T |
33815371 |
gaaatatcctatgatgcacttgaatgaagagctactaatgaagcataaacaccatcagtaatattcatcaacacttcatgtcttccctttttagccacca |
33815272 |
T |
|
| Q |
340 |
ccccatttttaattaccgctatagtat |
366 |
Q |
| |
|
|| ||||||||| ||||| ||||||| |
|
|
| T |
33815271 |
ccttatttttaatcaccgccatagtat |
33815245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 240 - 366
Target Start/End: Complemental strand, 33874841 - 33874715
Alignment:
| Q |
240 |
gaaatatcttatgatgcacttgaatgaagagctactaatgaagcataaacaccatcagtaatcctcatcaactcatcatgtcttcccttttcagccaccg |
339 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||| ||||||| |
|
|
| T |
33874841 |
gaaatatcctatgatgcacttgaatgaagagctactaatgaagcataaacaccatcagtaatattcatcaacacttcatgtcttccctttttagccacca |
33874742 |
T |
|
| Q |
340 |
ccccatttttaattaccgctatagtat |
366 |
Q |
| |
|
|| ||||||||| ||||| ||||||| |
|
|
| T |
33874741 |
ccttatttttaatcaccgccatagtat |
33874715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University