View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16011_low_15 (Length: 360)
Name: NF16011_low_15
Description: NF16011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16011_low_15 |
 | |
|
| [»] chr6 (14 HSPs) |
| |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
| [»] scaffold0264 (1 HSPs) |
| | |
|
| [»] scaffold0604 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 20205080 - 20204721
Alignment:
| Q |
1 |
cactttgaaacaagacctatgtttagcgatataaatgttaccaatgatcccatcccggaccaaaacttgttcacaaatgcattatcaaatcaattatccg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20205080 |
cactttgaaacaagacctatgtttagcgatataaatgttaccaatgatcccatcccggaccaaaacttgttcacaaatgcattatcaaatcaattatccg |
20204981 |
T |
|
| Q |
101 |
aacttgtcaatgttacggggaacaatgatgaaaaatttacgacaaattcattgatattgaatgataagcaaaccttgtatactgttgaacaatgtacaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
20204980 |
aacttgtcaatgttacggggaacaatgatgaaaaatttacgacaaattcattgatattgaatgataaacaaaccttgtatactgttgaacaatgtacaaa |
20204881 |
T |
|
| Q |
201 |
agatttgtcaactgacgaatgcaattcatgtctaaatgatatgatcagtaaagaaattccatggtcatttttgggaagtgttggaggaagaatcttatat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20204880 |
agatttgtcaactgacgaatgcaattcatgtctaaatgatatgatcagtaaagaaattccatggtcatttttgggaagtgttggaggaagaatcttatat |
20204781 |
T |
|
| Q |
301 |
cctagctgcaatctgaggtttgaattgttcaaattttacatggacggcgacgaagctcta |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20204780 |
cctagctgcaatctgaggtttgaattgttcaaattttacatggacggcgacgaagctcta |
20204721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 22099103 - 22098744
Alignment:
| Q |
1 |
cactttgaaacaagacctatgtttagcgatataaatgttaccaatgatcccatcccggaccaaaacttgttcacaaatgcattatcaaatcaattatccg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22099103 |
cactttgaaacaagacctatgtttagcgatataaatgttaccaatgatcccatcccggaccaaaacttgttcacaaatgcattatcaaatcaattatccg |
22099004 |
T |
|
| Q |
101 |
aacttgtcaatgttacggggaacaatgatgaaaaatttacgacaaattcattgatattgaatgataagcaaaccttgtatactgttgaacaatgtacaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
22099003 |
aacttgtcaatgttacggggaacaatgatgaaaaatttacgacaaattcattgatattgaatgataaacaaaccttgtatactgttgaacaatgtacaaa |
22098904 |
T |
|
| Q |
201 |
agatttgtcaactgacgaatgcaattcatgtctaaatgatatgatcagtaaagaaattccatggtcatttttgggaagtgttggaggaagaatcttatat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22098903 |
agatttgtcaactgacgaatgcaattcatgtctaaatgatatgatcagtaaagaaattccatggtcatttttgggaagtgttggaggaagaatcttatat |
22098804 |
T |
|
| Q |
301 |
cctagctgcaatctgaggtttgaattgttcaaattttacatggacggcgacgaagctcta |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22098803 |
cctagctgcaatctgaggtttgaattgttcaaattttacatggacggcgacgaagctcta |
22098744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 5 - 360
Target Start/End: Complemental strand, 21971637 - 21971282
Alignment:
| Q |
5 |
ttgaaacaagacctatgtttagcgatataaatgttaccaatgatcccatcccggaccaaaacttgttcacaaatgcattatcaaatcaattatccgaact |
104 |
Q |
| |
|
|||||||| | |||||||| ||||||||||| |||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21971637 |
ttgaaacagggcctatgttccgcgatataaatattacaaatggttccatcccggaccaaaacttgttcacaaatgcattatcaaatcaattatctgaact |
21971538 |
T |
|
| Q |
105 |
tgtcaatgttacggggaacaatgatgaaaaatttacgacaaattcattgatattgaatgataagcaaaccttgtatactgttgaacaatgtacaaaagat |
204 |
Q |
| |
|
||||||||||||||||||||| || ||||||| | ||| ||||||||| || ||||||||||| ||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
21971537 |
tgtcaatgttacggggaacaacgaggaaaaatatgcgaaaaattcattaattttgaatgataaacaaactttgtatactcttgaacaatgtacaaaagat |
21971438 |
T |
|
| Q |
205 |
ttgtcaactgacgaatgcaattcatgtctaaatgatatgatcagtaaagaaattccatggtcatttttgggaagtgttggaggaagaatcttatatccta |
304 |
Q |
| |
|
||||| | | | || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
21971437 |
ttgtctagtcaggattgcaattcatgtctaaatgatatgatcagtagagaaattccatggtcatttttgggaagtgttggaggaagaatcatatatccta |
21971338 |
T |
|
| Q |
305 |
gctgcaatctgaggtttgaattgttcaaattttacatggacggcgacgaagctcta |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
21971337 |
gctgcaatctgaggtttgaattgttcaaattttatatggacggcgacgaagctcta |
21971282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 7 - 357
Target Start/End: Complemental strand, 20085754 - 20085404
Alignment:
| Q |
7 |
gaaacaagacctatgtttagcgatataaatgttaccaatgatcccatcccggaccaaaacttgttcacaaatgcattatcaaatcaattatccgaacttg |
106 |
Q |
| |
|
|||||||| ||||||| ||||||||||||| | ||||| ||| ||||| | |||||||||||||||| | | ||||||||||||| ||||| |||||| |
|
|
| T |
20085754 |
gaaacaagtcctatgtatagcgatataaatatcaccaaagattccatcacaaaccaaaacttgttcactagtacattatcaaatcagttatctcaacttg |
20085655 |
T |
|
| Q |
107 |
tcaatgttacggggaacaatgatgaaaaatttacgacaaattcattgatattgaatgataagcaaaccttgtatactgttgaacaatgtacaaaagattt |
206 |
Q |
| |
|
|||| ||| ||| ||| || ||||| || || ||| |||||||| | | | |||||| ||||||||||||||| ||| ||||||||| ||||||| |
|
|
| T |
20085654 |
cgaatgatacaggggacagtggtgaaagatataagactaattcattaaaactaaatgatgtacaaaccttgtatactcttggacaatgtacgcaagattt |
20085555 |
T |
|
| Q |
207 |
gtcaactgacgaatgcaattcatgtctaaatgatatgatcagtaaagaaattccatggtcatttttgggaagtgttggaggaagaatcttatatcctagc |
306 |
Q |
| |
|
||| | | | || |||| ||| |||||||||||| |||||| || || |||||||||||| |||||| |||||||| |||||||| ||||||||||| |
|
|
| T |
20085554 |
gtctagtcaggattgcacttcttgtctaaatgatgtgatcaatacagcgattccatggtcaaatttgggtagtgttgggggaagaattatatatcctagc |
20085455 |
T |
|
| Q |
307 |
tgcaatctgaggtttgaattgttcaaattttacatggacggcgacgaagct |
357 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20085454 |
tgcaatctgaggtttgaattgttccaattttacatggacggcgacgaagct |
20085404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 169 - 357
Target Start/End: Original strand, 24385790 - 24385978
Alignment:
| Q |
169 |
caaaccttgtatactgttgaacaatgtacaaaagatttgtcaactgacgaatgcaattcatgtctaaatgatatgatcagtaaagaaattccatggtcat |
268 |
Q |
| |
|
||||||||||||||| ||| ||||||||| |||||||||| | | | || ||| ||| |||||||||||| ||||| || || ||||||||||| | |
|
|
| T |
24385790 |
caaaccttgtatactcttggacaatgtacgcaagatttgtctagtcaggattgcgcttcttgtctaaatgatgtgatcgttacagcaattccatggtaaa |
24385889 |
T |
|
| Q |
269 |
ttttgggaagtgttggaggaagaatcttatatcctagctgcaatctgaggtttgaattgttcaaattttacatggacggcgacgaagct |
357 |
Q |
| |
|
|||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24385890 |
atttgggtagtgttgggggaagaattatatatcctagctgcaatctgaggtttgaattgttccaattttacatggacggcgacgaagct |
24385978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 229 - 357
Target Start/End: Complemental strand, 18981220 - 18981092
Alignment:
| Q |
229 |
tgtctaaatgatatgatcagtaaagaaattccatggtcatttttgggaagtgttggaggaagaatcttatatcctagctgcaatctgaggtttgaattgt |
328 |
Q |
| |
|
|||||||||||| |||| | || || ||||||||||||| |||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18981220 |
tgtctaaatgatgtgattactacagcaattccatggtcaaatttgggtagtgttgggggaagaattatatatcctagctgcaatctgaggtttgaattgt |
18981121 |
T |
|
| Q |
329 |
tcaaattttacatggacggcgacgaagct |
357 |
Q |
| |
|
|| |||||||||||||||||||||||||| |
|
|
| T |
18981120 |
tccaattttacatggacggcgacgaagct |
18981092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 115 - 359
Target Start/End: Complemental strand, 18997177 - 18996933
Alignment:
| Q |
115 |
acggggaacaatgatgaaaaatttacgacaaattcattgatattgaatgataagcaaaccttgtatactgttgaacaatgtacaaaagatttgtcaactg |
214 |
Q |
| |
|
|||||| ||| || ||||| || || ||| |||||||| | | || ||||| | |||| |||||||| | ||| ||||||||| ||||||||| | || |
|
|
| T |
18997177 |
acggggtacagtgttgaaagatatatgactaattcattaaaactgtatgatgaacaaaacttgtatagtcttggacaatgtacgcgagatttgtctagtg |
18997078 |
T |
|
| Q |
215 |
acgaatgcaattcatgtctaaatgatatgatcagtaaagaaattccatggtcatttttgggaagtgttggaggaagaatcttatatcctagctgcaatct |
314 |
Q |
| |
|
| || |||| ||| |||||||| ||| |||||| || || ||||||||||||| ||| | | |||| | |||||||| ||||||||||||||||||| |
|
|
| T |
18997077 |
aggattgcacttcttgtctaaaggatgtgatcaatagagcaattccatggtcaaaattgagtaatgttaggggaagaattatatatcctagctgcaatct |
18996978 |
T |
|
| Q |
315 |
gaggtttgaattgttcaaattttacatggacggcgacgaagctct |
359 |
Q |
| |
|
|||||||||||||||| ||||||||||||| || ||||||||||| |
|
|
| T |
18996977 |
gaggtttgaattgttccaattttacatggagggtgacgaagctct |
18996933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 7 - 329
Target Start/End: Complemental strand, 20237667 - 20237345
Alignment:
| Q |
7 |
gaaacaagacctatgtttagcgatataaatgttaccaatgatcccatcccggaccaaaacttgttcacaaatgcattatcaaatcaattatccgaacttg |
106 |
Q |
| |
|
|||||||| ||||||| ||| ||||||||| | ||| | ||| ||||| | ||||||||| |||||| | | ||||||||||||| |||| |||||| |
|
|
| T |
20237667 |
gaaacaagtcctatgtatagagatataaatatcaccgaagattccatcacataccaaaactcgttcactagtacattatcaaatcagttatatcaacttg |
20237568 |
T |
|
| Q |
107 |
tcaatgttacggggaacaatgatgaaaaatttacgacaaattcattgatattgaatgataagcaaaccttgtatactgttgaacaatgtacaaaagattt |
206 |
Q |
| |
|
|||| || ||| ||| |||||||| | | ||| |||||||| | | |||||||||| ||||||||||||| | ||| ||||||||| | |||||| |
|
|
| T |
20237567 |
cgaatgacacaggggacagtgatgaaatgtatctgactaattcattaaaactgaatgataaacaaaccttgtatagtcttggacaatgtacgagagattt |
20237468 |
T |
|
| Q |
207 |
gtcaactgacgaatgcaattcatgtctaaatgatatgatcagtaaagaaattccatggtcatttttgggaagtgttggaggaagaatcttatatcctagc |
306 |
Q |
| |
|
||| | ||| || ||| ||| ||||||||| | ||||| || || |||||||||| || |||||| |||||||| |||||||| | ||||||||| |
|
|
| T |
20237467 |
gtctagtgaggattgcgcttcttgtctaaatactgtgatcgttacagcaattccatggccaaatttgggcagtgttgggggaagaattatgtatcctagc |
20237368 |
T |
|
| Q |
307 |
tgcaatctgaggtttgaattgtt |
329 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
20237367 |
tgtaatctgaggtttgaattgtt |
20237345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 7 - 329
Target Start/End: Complemental strand, 22131651 - 22131329
Alignment:
| Q |
7 |
gaaacaagacctatgtttagcgatataaatgttaccaatgatcccatcccggaccaaaacttgttcacaaatgcattatcaaatcaattatccgaacttg |
106 |
Q |
| |
|
|||||||| ||||||| ||| ||||||||| | ||| | ||| ||||| | ||||||||| |||||| | | ||||||||||||| |||| |||||| |
|
|
| T |
22131651 |
gaaacaagtcctatgtatagagatataaatatcaccgaagattccatcacataccaaaactcgttcactagtacattatcaaatcagttatatcaacttg |
22131552 |
T |
|
| Q |
107 |
tcaatgttacggggaacaatgatgaaaaatttacgacaaattcattgatattgaatgataagcaaaccttgtatactgttgaacaatgtacaaaagattt |
206 |
Q |
| |
|
|||| || ||| ||| |||||||| | | ||| |||||||| | | |||||||||| ||||||||||||| | ||| ||||||||| | |||||| |
|
|
| T |
22131551 |
cgaatgacacaggggacagtgatgaaatgtatctgactaattcattaaaactgaatgataaacaaaccttgtatagtcttggacaatgtacgagagattt |
22131452 |
T |
|
| Q |
207 |
gtcaactgacgaatgcaattcatgtctaaatgatatgatcagtaaagaaattccatggtcatttttgggaagtgttggaggaagaatcttatatcctagc |
306 |
Q |
| |
|
||| | ||| || ||| ||| ||||||||| | ||||| || || |||||||||| || |||||| |||||||| |||||||| | ||||||||| |
|
|
| T |
22131451 |
gtctagtgaggattgcgcttcttgtctaaatactgtgatcgttacagcaattccatggccaaatttgggcagtgttgggggaagaattatgtatcctagc |
22131352 |
T |
|
| Q |
307 |
tgcaatctgaggtttgaattgtt |
329 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
22131351 |
tgtaatctgaggtttgaattgtt |
22131329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 59 - 358
Target Start/End: Original strand, 22205458 - 22205757
Alignment:
| Q |
59 |
accaaaacttgttcacaaatgcattatcaaatcaattatccgaacttgtcaatgttacggggaacaatgatgaaaaatttacgacaaattcattgatatt |
158 |
Q |
| |
|
||||||||| |||||| | | | ||||| ||||| ||||| |||||| |||| ||| ||| ||| |||||||| || || ||| |||||||| | | | |
|
|
| T |
22205458 |
accaaaactggttcactagtaccttatcgaatcagttatctcaacttgcgaatgatacaggggacagtgatgaaagatataagactaattcattaaaact |
22205557 |
T |
|
| Q |
159 |
gaatgataagcaaaccttgtatactgttgaacaatgtacaaaagatttgtcaactgacgaatgcaattcatgtctaaatgatatgatcagtaaagaaatt |
258 |
Q |
| |
|
||||||| ||||||||||||| | ||| ||||||||| ||||||||| | ||| | ||| | | ||||||||| || |||||| || | |||| |
|
|
| T |
22205558 |
gaatgatgtacaaaccttgtatagtcttggacaatgtacgcgagatttgtctagtgagggttgcgctacttgtctaaataatgtgatcactacatcaatt |
22205657 |
T |
|
| Q |
259 |
ccatggtcatttttgggaagtgttggaggaagaatcttatatcctagctgcaatctgaggtttgaattgttcaaattttacatggacggcgacgaagctc |
358 |
Q |
| |
|
||||||||| ||| || |||||||| |||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||| |
|
|
| T |
22205658 |
ccatggtcaaatttcggtagtgttgggggaagaattatctatcctagctgcaatctgaggtttgaattgttccctttttacatggagggtgacgaagctc |
22205757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 270 - 338
Target Start/End: Original strand, 20232108 - 20232176
Alignment:
| Q |
270 |
tttgggaagtgttggaggaagaatcttatatcctagctgcaatctgaggtttgaattgttcaaatttta |
338 |
Q |
| |
|
||||||||||||||| |||||| | ||||||||||| || ||| ||||||||||||||||| ||||||| |
|
|
| T |
20232108 |
tttgggaagtgttggtggaagagttttatatcctagttgtaatttgaggtttgaattgttccaatttta |
20232176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 270 - 338
Target Start/End: Original strand, 22126092 - 22126160
Alignment:
| Q |
270 |
tttgggaagtgttggaggaagaatcttatatcctagctgcaatctgaggtttgaattgttcaaatttta |
338 |
Q |
| |
|
||||||||||||||| |||||| | ||||||||||| || ||| ||||||||||||||||| ||||||| |
|
|
| T |
22126092 |
tttgggaagtgttggtggaagagttttatatcctagttgtaatttgaggtttgaattgttccaatttta |
22126160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 178
Target Start/End: Complemental strand, 18981337 - 18981218
Alignment:
| Q |
59 |
accaaaacttgttcacaaatgcattatcaaatcaattatccgaacttgtcaatgttacggggaacaatgatgaaaaatttacgacaaattcattgatatt |
158 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||| |||||| |||| ||| ||| ||| |||||||| | | ||| |||||||| | | | |
|
|
| T |
18981337 |
accaaaacttgttcactagtgcattatcaaatcaattatctcaacttgcgaatgatacaggggacagtgatgaaatgtatctgactaattcattaaaaat |
18981238 |
T |
|
| Q |
159 |
gaatgataagcaaaccttgt |
178 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
18981237 |
gaatgatacacaaaccttgt |
18981218 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 24385621 - 24385698
Alignment:
| Q |
7 |
gaaacaagacctatgtttagcgatataaatgttaccaatgatcccatcccggaccaaaacttgttcacaaatgcattat |
85 |
Q |
| |
|
|||||||| ||||||| ||||||||||||| | ||||| ||| ||||| | |||||||||||||||| ||| |||||| |
|
|
| T |
24385621 |
gaaacaagtcctatgtatagcgatataaatatcaccaa-gattccatcacaaaccaaaacttgttcactaatacattat |
24385698 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 63 - 358
Target Start/End: Original strand, 48291 - 48586
Alignment:
| Q |
63 |
aaacttgttcacaaatgcattatcaaatcaattatccgaacttgtcaatgttacggggaacaatgatgaaaaatttacgacaaattcattgatattgaat |
162 |
Q |
| |
|
|||||||||||| | | ||||||| ||||| ||||| |||||| |||| ||| ||| ||| |||||| | || || ||| |||||||| | | ||||| |
|
|
| T |
48291 |
aaacttgttcactagtacattatcgaatcagttatctcaacttgcaaatgatacaggggacagtgatgatagatataagactaattcattaaaactgaat |
48390 |
T |
|
| Q |
163 |
gataagcaaaccttgtatactgttgaacaatgtacaaaagatttgtcaactgacgaatgcaattcatgtctaaatgatatgatcagtaaagaaattccat |
262 |
Q |
| |
|
||||| ||||||||||||| | ||| ||||||||| | ||||||||| | | | || ||| | | |||||||||||| ||||| || || |||||||| |
|
|
| T |
48391 |
gataaacaaaccttgtatagtcttgcacaatgtacgagagatttgtctagtcaggattgctctacttgtctaaatgatgtgatcgttacagcaattccat |
48490 |
T |
|
| Q |
263 |
ggtcatttttgggaagtgttggaggaagaatcttatatcctagctgcaatctgaggtttgaattgttcaaattttacatggacggcgacgaagctc |
358 |
Q |
| |
|
||||| |||||| |||||||| |||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
48491 |
ggtcaaatttgggtagtgttgggggaagaattatctatcctagctgcaatctgaggtttgaattgttccgtttttacatggagggcgacgaagctc |
48586 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 59 - 347
Target Start/End: Original strand, 5814 - 6102
Alignment:
| Q |
59 |
accaaaacttgttcacaaatgcattatcaaatcaattatccgaacttgtcaatgttacggggaacaatgatgaaaaatttacgacaaattcattgatatt |
158 |
Q |
| |
|
|||||||||||||||| | | ||||||| ||| | ||||| |||||| |||| ||| ||| ||| |||||| | || || ||| |||||||| | | | |
|
|
| T |
5814 |
accaaaacttgttcactagtacattatccaatgagttatctcaacttgcgaatgatacaggggacagtgatgatagatataagactaattcattaaaact |
5913 |
T |
|
| Q |
159 |
gaatgataagcaaaccttgtatactgttgaacaatgtacaaaagatttgtcaactgacgaatgcaattcatgtctaaatgatatgatcagtaaagaaatt |
258 |
Q |
| |
|
||||||| ||||||||||||| | ||| ||||||||| ||||||||| | ||| || ||| | | |||||||||||| ||||| || || |||| |
|
|
| T |
5914 |
gaatgatgtacaaaccttgtatagtcttggacaatgtacgcgagatttgtctagtgaggattgcgctacttgtctaaatgatgtgatcgctacagcaatt |
6013 |
T |
|
| Q |
259 |
ccatggtcatttttgggaagtgttggaggaagaatcttatatcctagctgcaatctgaggtttgaattgttcaaattttacatggacgg |
347 |
Q |
| |
|
|| |||||| |||||| |||||||| || ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6014 |
ccctggtcaaatttgggtagtgttgggggcagaattatatatcctagctgcaatctgaggtttgaattgttccaattttacatggacgg |
6102 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 59 - 358
Target Start/End: Complemental strand, 15655 - 15356
Alignment:
| Q |
59 |
accaaaacttgttcacaaatgcattatcaaatcaattatccgaacttgtcaatgttacggggaacaatgatgaaaaatttacgacaaattcattgatatt |
158 |
Q |
| |
|
||||||||| |||||| | | | ||||| ||||| ||||| |||||| |||| ||| ||| ||| |||||||| || || ||| |||||||| | | | |
|
|
| T |
15655 |
accaaaactggttcactagtaccttatcgaatcagttatctcaacttgcgaatgatacaggggacagtgatgaaagatataagactaattcattaaaact |
15556 |
T |
|
| Q |
159 |
gaatgataagcaaaccttgtatactgttgaacaatgtacaaaagatttgtcaactgacgaatgcaattcatgtctaaatgatatgatcagtaaagaaatt |
258 |
Q |
| |
|
||||||||| ||||||||||||| | ||| ||||||||| ||||||||| | ||| | ||| | | ||||||||| || |||||| || | |||| |
|
|
| T |
15555 |
gaatgataaacaaaccttgtatagtcttggacaatgtacgcgagatttgtctagtgagggttgcgctacttgtctaaataatgtgatcactacatcaatt |
15456 |
T |
|
| Q |
259 |
ccatggtcatttttgggaagtgttggaggaagaatcttatatcctagctgcaatctgaggtttgaattgttcaaattttacatggacggcgacgaagctc |
358 |
Q |
| |
|
||||||||| |||||| |||||||| |||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||| |
|
|
| T |
15455 |
ccatggtcaaatttgggtagtgttgggggaagaattatctatcctagctgcaatctgaggtttgaattgttccctttttacatggagggtgacgaagctc |
15356 |
T |
|
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Target: scaffold0604 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0604
Description:
Target: scaffold0604; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 255 - 340
Target Start/End: Complemental strand, 5587 - 5503
Alignment:
| Q |
255 |
aattccatggtcatttttgggaagtgttggaggaagaatcttatatcctagctgcaatctgaggtttgaattgttcaaattttaca |
340 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||| |||| || ||| || ||||||||||||||| ||||||||| |
|
|
| T |
5587 |
aattccatggtcattgttgggaagtgttggaggaagaattctata-cctaactacaagctaaggtttgaattgttccaattttaca |
5503 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 255 - 340
Target Start/End: Complemental strand, 10402824 - 10402739
Alignment:
| Q |
255 |
aattccatggtcatttttgggaagtgttggaggaagaatcttatatcctagctgcaatctgaggtttgaattgttcaaattttaca |
340 |
Q |
| |
|
|||||| ||||| | |||||||||||| || |||||| | ||||||||||| |||||| ||||||||||||||||| ||||||||| |
|
|
| T |
10402824 |
aattccttggtcttatttgggaagtgtaggtggaagagttttatatcctagttgcaatatgaggtttgaattgttccaattttaca |
10402739 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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