View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16011_low_16 (Length: 351)

Name: NF16011_low_16
Description: NF16011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16011_low_16
NF16011_low_16
[»] chr2 (3 HSPs)
chr2 (16-140)||(33357226-33357350)
chr2 (253-345)||(33358052-33358143)
chr2 (139-241)||(33357374-33357486)


Alignment Details
Target: chr2 (Bit Score: 96; Significance: 5e-47; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 16 - 140
Target Start/End: Original strand, 33357226 - 33357350
Alignment:
Q  16 aataatcatgatagaaacacactaccatgagagtaagaaactgagtctaaaaagaacnnnnnnncacatgaattgcttgttttcctctccaaatggtgga 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||       | ||||||||||||||||||||||||||||||||||    
T  33357226 aataatcatgatagaaacacactaccatgagagtaagaaactgattctaaaaagaacaaaaaaacccatgaattgcttgttttcctctccaaatggtgga 33357325  T
Q  116 ggcctaaaaaacaacaacacaggaa 140  Q
    |||||||||||||||||||||||||    
T  33357326 ggcctaaaaaacaacaacacaggaa 33357350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 253 - 345
Target Start/End: Original strand, 33358052 - 33358143
Alignment:
Q  253 ttcaaatgaaactagttcccactcaagaacgagttttctaactatagttatagacgttttaagttgacttatttccaatcattttcatctcac 345  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33358052 ttcaaatgaaactagttcc-actcaataacgagttttctaactatagttatagacgttttaagttgacttatttccaatcattttcatatcac 33358143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 139 - 241
Target Start/End: Original strand, 33357374 - 33357486
Alignment:
Q  139 aagttaggaagttgtgatgttacgttaaactttgagacatattagttgtgttcacggagcc----------gatacatggtaagactatgaaatctaata 228  Q
    |||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||          |||||||||||||||||||||||||||||    
T  33357374 aagtaaggaagttgtgatgttacgttaaactttgtgtcatattagttgtgttcacggagccgatacatgtagatacatggtaagactatgaaatctaata 33357473  T
Q  229 tggagaaactatt 241  Q
    |||||||||||||    
T  33357474 tggagaaactatt 33357486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University