View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16011_low_18 (Length: 334)
Name: NF16011_low_18
Description: NF16011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16011_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 13714710 - 13714393
Alignment:
| Q |
1 |
agagataaagttgatgtgagtgaaaatattgataggacatgataagttttggtggagtgctataatctaaccatgnnnnnnntaggtccattatggacca |
100 |
Q |
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| T |
13714710 |
agagataaagttgatgtgggttaaaatattgattggacatgataagttttggtggagtgctctaatctaaccataaaaaaaataggtctattatggacca |
13714611 |
T |
|
| Q |
101 |
acttttttacaggtctaatttataagaaaccatctttttgtctttcctctactttagttttatgtcttcttatgtactagttcatccttctatactagac |
200 |
Q |
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||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
13714610 |
acttttttacaggtccaatttatacggaaccatctttttgtctttcctctactttagttttatgtcttcttaagtactagttcatccttctatactagac |
13714511 |
T |
|
| Q |
201 |
gttctttggagtagtctaaaaacccgcactaagggctagacctattagctcattacccatctccattgaaagttcaactcccaagggtgaagaacaaata |
300 |
Q |
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| T |
13714510 |
gtcctttgaagtagtctagaaacccgcactaagggctagacctattagctcattacccatctccattgaaagttcaactcccaagggtgaagaacaaata |
13714411 |
T |
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| Q |
301 |
tttgctaatagtcaaagt |
318 |
Q |
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|||| ||||||||||||| |
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| T |
13714410 |
tttgttaatagtcaaagt |
13714393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 4849188 - 4849311
Alignment:
| Q |
1 |
agagataaagttgatgtgagtgaaaatattgataggacatgataagttttggtggagtgctataatctaaccatgnnnnnnntaggtccattatggacca |
100 |
Q |
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| T |
4849188 |
agagataaagttgatgtgggttaaaatattgataggacatgataaattttgatggaatgctataatcaaaccatgaaaaaaatagatccattatggacca |
4849287 |
T |
|
| Q |
101 |
acttttttacaggtctaatttata |
124 |
Q |
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||||||||||||||| |||||||| |
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| T |
4849288 |
acttttttacaggtccaatttata |
4849311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 45907480 - 45907357
Alignment:
| Q |
1 |
agagataaagttgatgtgagtgaaaatattgataggacatgataagttttggtggagtgctataatctaaccatgnnnnnnntaggtccattatggacca |
100 |
Q |
| |
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|||||||||||||||||| || |||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
45907480 |
agagataaagttgatgtgggttaaaatatttataggacatgataaattttggtggagtgctataatctaaccatgaaaaaaataggtctattatggacca |
45907381 |
T |
|
| Q |
101 |
acttttttacaggtctaatttata |
124 |
Q |
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||||||||||||||| |||||||| |
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| T |
45907380 |
acttttttacaggtccaatttata |
45907357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 22918224 - 22918316
Alignment:
| Q |
23 |
aaaatattgataggacatgataagttttggtggagtgctataatctaaccatgnnnnnnntaggtccattatggaccaacttttttacaggtc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
22918224 |
aaaatattgataggacatgataagttttggtggagtgctaaaatctaaccatgaaaaaaataggtccattatggaccaacttttttacaggtc |
22918316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 29 - 124
Target Start/End: Complemental strand, 4783848 - 4783753
Alignment:
| Q |
29 |
ttgataggacatgataagttttggtggagtgctataatctaaccatgnnnnnnntaggtccattatggaccaacttttttacaggtctaatttata |
124 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||| || |||||||| |
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| T |
4783848 |
ttgataggacatgataagttttggtggagtgctataatctaaccatgaaaaaaataggtctattatgaaccaacttttttacagatccaatttata |
4783753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 1626810 - 1626890
Alignment:
| Q |
142 |
ctttcctctactttagttttatgtcttcttatgtactagttcatccttctatactagacgttctttggagtagtctaaaaacc |
224 |
Q |
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||||||| ||||||| |||| ||||| ||||||| |||||||| |||| | |||||||| | |||||||||||||| ||||| |
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| T |
1626810 |
ctttcctttactttattttt--gtctttttatgtaatagttcatgcttccacactagacgctttttggagtagtctagaaacc |
1626890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 211
Target Start/End: Original strand, 9021048 - 9021116
Alignment:
| Q |
143 |
tttcctctactttagttttatgtcttcttatgtactagttcatccttctatactagacgttctttggag |
211 |
Q |
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|||||| || |||| ||||||||||||||| || ||||||||||||| |||||| | | ||||||||| |
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| T |
9021048 |
tttcctttattttatttttatgtcttcttagataatagttcatccttcaatactaaatgctctttggag |
9021116 |
T |
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