View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16011_low_19 (Length: 332)
Name: NF16011_low_19
Description: NF16011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16011_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 32 - 321
Target Start/End: Complemental strand, 6639848 - 6639559
Alignment:
| Q |
32 |
aacatcaaacttcaatatatattgaagaacataaagaaaataattcaacatgtttgcttttcaagaatgttaaaacttaaa-gataaagaatatgtagta |
130 |
Q |
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| T |
6639848 |
aacatcaaacttcaatatatattgaagaacataaagaaaataattcaacatgtttgcttttcaagaatgttaaaacttaaaagataaagaatatgtagta |
6639749 |
T |
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| Q |
131 |
cnnnnnnngggaatgacggtaagcacggaaattcaattattttgtaagnnnnnnncatatccaaaatagtgaaaattagattttgcgcaaatctacttga |
230 |
Q |
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| T |
6639748 |
caaaaaaagggaatgacggtaagcacggaaattcaattattttgtaagaaaaaaacatatccaaaatagtgaaaattagattttgcgcaaatctacttga |
6639649 |
T |
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| Q |
231 |
tcgaagatggaccaacgagagatgtgtgtctccatttttgcttggtctacgatgttaataattaaggtgagattgtaagaaaattatgatg |
321 |
Q |
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| T |
6639648 |
tcgaagatggaccaacgagagatgtgtttctccatttttgcttggtctacgatg-taataattaaggtgagattgtaagaaaattatgatg |
6639559 |
T |
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