View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16011_low_2 (Length: 598)
Name: NF16011_low_2
Description: NF16011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16011_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 17 - 355
Target Start/End: Original strand, 16572132 - 16572473
Alignment:
| Q |
17 |
atactcgttaacatttccttttaaatt-attgtatgcgaagataacgagaagcctcaaaaaattcattgggttaaatgaggtcaggtgtacctatctaaa |
115 |
Q |
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| T |
16572132 |
atactcgttaatattttactttaaatttattgtatgtgaggattatgagaagcctagaaaaattcattgggttaaatgaggtcaggtgtacctatctaaa |
16572231 |
T |
|
| Q |
116 |
gtaagagatgggtaaggtgagcgtcacatgcaagcttttaattacgcataattagaaaaatattgttggaggtagagaagaatggtttgttgtttaaaga |
215 |
Q |
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| T |
16572232 |
gtaagagatgggtaaggtgagcgtcacatgcaagcttttaattacgcataattagaaaaatattgttggaggtagagaagaatggtttgttgtttaagga |
16572331 |
T |
|
| Q |
216 |
tttagcaagaaaaaatatgagttgtcaaatggtggtatgattgcaagttcaattagagatttagtgtggtggagagaatttcaaagagg--atggaacac |
313 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
16572332 |
tttaccaagaaaaaatatgagttgtcaaatggtggtatgattgcaagttcaagtagagatttagtgtggtggagagatattcaaagaggatatggaacac |
16572431 |
T |
|
| Q |
314 |
attttagaataatcaggttaattggttttcaaaaatttggat |
355 |
Q |
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| T |
16572432 |
attttagaataatcaggttaattggttttcaaaaatttggat |
16572473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 374 - 580
Target Start/End: Original strand, 16572789 - 16572995
Alignment:
| Q |
374 |
tagctaatttctcagttgggatcaagtgtaattagttagaaatctaatgtaaatatttggtctgatcggatataaataaattcaatttcgttatatttgt |
473 |
Q |
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| T |
16572789 |
tagctaatttctcagttgggatcaagtgtaattagttaggaatctaatgtaaatatttggtatgaccggatataaataaatccactttctttatatttgt |
16572888 |
T |
|
| Q |
474 |
gtttttattactattcttaattcttctttgacgtgcaatcatagattaatcttttgacaagaggcgtgttagacatagacatcccttgtaaggcggatgg |
573 |
Q |
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||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
16572889 |
gtttttattactattcttaattcttctttgatgtgcaatcctagattaatcttttgacaagaggcgtgctagacatagacatcccttgtaagggagatgg |
16572988 |
T |
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| Q |
574 |
gtaaagg |
580 |
Q |
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||||||| |
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| T |
16572989 |
gtaaagg |
16572995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 415 - 531
Target Start/End: Complemental strand, 18435889 - 18435773
Alignment:
| Q |
415 |
atctaatgtaaatatttggtctgatcggatataaataaattcaatttcgttatatttgtgtttttattactattcttaattcttctttgacgtgcaatca |
514 |
Q |
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|||||||||||||| ||| |||||| |||||||||||||| | |||| | || ||||||| |||||||||| ||||||| ||| ||||| |||||| |
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| T |
18435889 |
atctaatgtaaatacttgatctgattggatataaataaatcctattttataatgtttgtgtctttattactactcttaatgtttcattgactagcaatcc |
18435790 |
T |
|
| Q |
515 |
tagattaatcttttgac |
531 |
Q |
| |
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||||| |||||||||| |
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| T |
18435789 |
aagattgatcttttgac |
18435773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 397 - 513
Target Start/End: Original strand, 15184182 - 15184299
Alignment:
| Q |
397 |
aagtgtaattagttagaaatctaatgtaaatatttggtctgatcggatataaataaattcaatttc-gttatatttgtgtttttattactattcttaatt |
495 |
Q |
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|||||| ||||||||| || ||||||||||||||||||||||||| ||||||| ||| | ||||| |||| |||| |||||||||| ||||||| |
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| T |
15184182 |
aagtgttattagttagggatataatgtaaatatttggtctgatcggctataaatgaatcctatttcatttatgccagtgtctttattactactcttaatg |
15184281 |
T |
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| Q |
496 |
cttctttgacgtgcaatc |
513 |
Q |
| |
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|||||| |||||| |||| |
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| T |
15184282 |
cttcttcgacgtgtaatc |
15184299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 388 - 527
Target Start/End: Original strand, 29275758 - 29275899
Alignment:
| Q |
388 |
gttgggatcaagtgtaattagttagaaatctaatgtaaatatttggtct-gatcggatataaataaattcaatttcgttatatttgtgtttttattacta |
486 |
Q |
| |
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|||||||| |||||| ||| ||||| |||||||||||||| ||||||| ||| | ||||||||||||| |||||||||||| ||||| ||| ||||| |
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| T |
29275758 |
gttgggattaagtgttattggttagggatctaatgtaaatacttggtctagat-gactataaataaattctatttcgttatatctgtgtctttgttactg |
29275856 |
T |
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| Q |
487 |
ttct--taattcttctttgacgtgcaatcatagattaatcttt |
527 |
Q |
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||| |||| ||||| |||||||||||| ||||| |||||| |
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| T |
29275857 |
ctcttataatacttctctgacgtgcaatctgagattgatcttt |
29275899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 531
Target Start/End: Original strand, 31930420 - 31930560
Alignment:
| Q |
391 |
gggatcaagtgtaattagttagaaatctaatgtaaatatttggtctgatcggatataaataaattcaatttcgttatatttgtgtttttattactattct |
490 |
Q |
| |
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||||| |||||||||||||||| ||| ||||||||||| |||||||| || || |||||||| | ||| ||||||| |||| ||||||||| ||| |
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| T |
31930420 |
gggattaagtgtaattagttaggaatttaatgtaaatacttggtctggatggctacaaataaatcctattatgttatatcagtgtctttattactgctct |
31930519 |
T |
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| Q |
491 |
taattcttctttgacgtgcaatcatagattaatcttttgac |
531 |
Q |
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|||| |||| | |||||||| ||||| |||||||||| |
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| T |
31930520 |
taatgtttctccggcgtgcaatatgagattgatcttttgac |
31930560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 447
Target Start/End: Complemental strand, 11219763 - 11219704
Alignment:
| Q |
388 |
gttgggatcaagtgtaattagttagaaatctaatgtaaatatttggtctgatcggatata |
447 |
Q |
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| T |
11219763 |
gttggtattaagtgtaattgattaggaatctaatgtaaatacttggtctgatcggctata |
11219704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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