View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16011_low_22 (Length: 266)
Name: NF16011_low_22
Description: NF16011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16011_low_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 8 - 252
Target Start/End: Original strand, 36714393 - 36714637
Alignment:
| Q |
8 |
tgagatgaatggtcccaaaatttgacacttactacgttataaaaaggccttgtggagatgcattttccgttcagatccacattgtccttctcttttccta |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36714393 |
tgagttgaatggtcccaaaatttgacacttactacgttataaaaaggccttgtggagatgcattttccgttcagatccacattgtccttctcttttccta |
36714492 |
T |
|
| Q |
108 |
gatctttatttctcttctctttcctgcaacaaccttcattcaaagttagtaccagctttcacacaacaataacaaggtaccaaccattgcttccattttt |
207 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36714493 |
gatctttatttctcttctctttcctacaacaaccttcattcaaagttagtagcagctttcacacaacaataacaaggtaccaaccattgcttccattttt |
36714592 |
T |
|
| Q |
208 |
tattttattaggttgttgttcaaagaatgaaatgttgttggtcat |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36714593 |
tattttattaggttgttgttcaaagaatgaaatgttgttggtcat |
36714637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University