View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16011_low_23 (Length: 263)

Name: NF16011_low_23
Description: NF16011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16011_low_23
NF16011_low_23
[»] scaffold0288 (1 HSPs)
scaffold0288 (12-263)||(7071-7323)
[»] chr8 (16 HSPs)
chr8 (15-182)||(36684676-36684844)
chr8 (15-188)||(26241265-26241439)
chr8 (51-168)||(12615138-12615256)
chr8 (15-182)||(11989033-11989201)
chr8 (15-188)||(36054595-36054769)
chr8 (15-117)||(16383884-16383987)
chr8 (61-187)||(23950287-23950414)
chr8 (42-167)||(33303759-33303886)
chr8 (61-182)||(32551571-32551693)
chr8 (17-167)||(10921087-10921237)
chr8 (15-188)||(7323143-7323317)
chr8 (15-113)||(30577079-30577178)
chr8 (61-119)||(10954406-10954464)
chr8 (61-119)||(10962411-10962469)
chr8 (133-180)||(14540997-14541044)
chr8 (130-188)||(39506697-39506755)
[»] chr6 (22 HSPs)
chr6 (15-182)||(4111336-4111504)
chr6 (15-182)||(13276564-13276732)
chr6 (15-182)||(28890860-28891028)
chr6 (15-182)||(3027236-3027404)
chr6 (15-182)||(31803068-31803236)
chr6 (15-182)||(5153320-5153488)
chr6 (15-156)||(27613305-27613447)
chr6 (15-119)||(3257181-3257286)
chr6 (61-182)||(8437570-8437692)
chr6 (15-182)||(3729004-3729172)
chr6 (42-155)||(25436596-25436711)
chr6 (51-176)||(479167-479293)
chr6 (13-182)||(1101192-1101362)
chr6 (69-168)||(24011949-24012049)
chr6 (76-188)||(12296939-12297052)
chr6 (12-115)||(17156295-17156399)
chr6 (12-176)||(32187233-32187398)
chr6 (53-115)||(14500071-14500134)
chr6 (130-188)||(24848886-24848944)
chr6 (48-98)||(33627926-33627976)
chr6 (83-156)||(1449863-1449937)
chr6 (69-117)||(23645897-23645946)
[»] chr3 (29 HSPs)
chr3 (15-182)||(34705263-34705431)
chr3 (15-182)||(39391054-39391222)
chr3 (15-188)||(47597038-47597212)
chr3 (15-168)||(52174759-52174913)
chr3 (15-182)||(1782638-1782806)
chr3 (15-182)||(33249416-33249584)
chr3 (15-188)||(20647749-20647923)
chr3 (15-188)||(28793646-28793820)
chr3 (15-182)||(40000733-40000901)
chr3 (15-168)||(54650459-54650613)
chr3 (61-188)||(29076862-29076990)
chr3 (61-182)||(19420966-19421088)
chr3 (15-168)||(34422620-34422774)
chr3 (15-119)||(46068053-46068158)
chr3 (15-181)||(40488999-40489166)
chr3 (51-156)||(47844525-47844631)
chr3 (15-188)||(55008094-55008263)
chr3 (46-119)||(46181839-46181913)
chr3 (69-182)||(24540984-24541098)
chr3 (15-156)||(25536866-25537008)
chr3 (61-169)||(34636354-34636463)
chr3 (15-107)||(40000487-40000580)
chr3 (43-119)||(46116484-46116561)
chr3 (61-168)||(33370428-33370536)
chr3 (15-96)||(41873473-41873554)
chr3 (19-98)||(33069392-33069471)
chr3 (61-119)||(39171418-39171476)
chr3 (130-176)||(41636293-41636339)
chr3 (81-182)||(13596165-13596267)
[»] chr1 (26 HSPs)
chr1 (15-188)||(19708925-19709099)
chr1 (15-182)||(39860414-39860582)
chr1 (15-187)||(52222724-52222897)
chr1 (15-182)||(33785198-33785366)
chr1 (15-181)||(8417232-8417399)
chr1 (15-182)||(6891307-6891475)
chr1 (15-156)||(46846788-46846930)
chr1 (51-182)||(17805817-17805949)
chr1 (64-187)||(18353087-18353211)
chr1 (15-182)||(6889461-6889629)
chr1 (60-182)||(24038245-24038368)
chr1 (52-188)||(50097031-50097168)
chr1 (13-176)||(26257400-26257564)
chr1 (15-156)||(13253274-13253415)
chr1 (15-168)||(44969045-44969199)
chr1 (60-176)||(34083979-34084096)
chr1 (51-176)||(19507067-19507193)
chr1 (14-98)||(8703847-8703931)
chr1 (61-156)||(7109581-7109677)
chr1 (61-156)||(12029317-12029412)
chr1 (15-98)||(31225536-31225619)
chr1 (13-176)||(44779427-44779591)
chr1 (51-176)||(44912607-44912733)
chr1 (130-168)||(5616512-5616550)
chr1 (51-156)||(6888986-6889091)
chr1 (15-67)||(3831590-3831642)
[»] scaffold0037 (1 HSPs)
scaffold0037 (15-187)||(81292-81465)
[»] chr7 (22 HSPs)
chr7 (15-187)||(15943071-15943244)
chr7 (15-188)||(11410519-11410693)
chr7 (15-182)||(2732294-2732462)
chr7 (15-182)||(1411474-1411642)
chr7 (51-182)||(34521232-34521364)
chr7 (61-182)||(14776181-14776303)
chr7 (19-119)||(48214130-48214231)
chr7 (15-117)||(37807027-37807130)
chr7 (61-182)||(3356964-3357086)
chr7 (16-168)||(18533317-18533470)
chr7 (15-155)||(31673569-31673710)
chr7 (15-182)||(41892127-41892295)
chr7 (13-176)||(21806510-21806674)
chr7 (54-112)||(24421891-24421949)
chr7 (13-186)||(12419104-12419277)
chr7 (61-182)||(41399709-41399830)
chr7 (130-182)||(2196048-2196100)
chr7 (130-169)||(46191736-46191775)
chr7 (52-98)||(4067943-4067989)
chr7 (140-182)||(36820945-36820987)
chr7 (127-176)||(2941194-2941243)
chr7 (127-176)||(13391064-13391113)
[»] chr4 (28 HSPs)
chr4 (15-187)||(38308025-38308198)
chr4 (15-182)||(40730390-40730558)
chr4 (15-168)||(47691596-47691750)
chr4 (15-182)||(10010820-10010988)
chr4 (15-182)||(10017961-10018129)
chr4 (15-182)||(16711747-16711915)
chr4 (52-168)||(41324403-41324519)
chr4 (15-182)||(48826004-48826172)
chr4 (15-169)||(38973599-38973754)
chr4 (52-188)||(9627484-9627621)
chr4 (21-119)||(14599049-14599148)
chr4 (15-156)||(20039607-20039749)
chr4 (52-187)||(8753776-8753912)
chr4 (15-168)||(48801189-48801343)
chr4 (15-119)||(7363488-7363593)
chr4 (64-182)||(48089793-48089912)
chr4 (61-182)||(37010983-37011104)
chr4 (65-117)||(40412802-40412855)
chr4 (52-161)||(23106372-23106483)
chr4 (76-168)||(41487467-41487560)
chr4 (137-188)||(40412844-40412895)
chr4 (61-119)||(52225643-52225702)
chr4 (52-98)||(25040183-25040229)
chr4 (98-182)||(11845391-11845475)
chr4 (51-117)||(32212255-32212322)
chr4 (130-169)||(46903961-46904000)
chr4 (131-168)||(45783937-45783974)
chr4 (48-115)||(36488842-36488910)
[»] scaffold0129 (1 HSPs)
scaffold0129 (15-182)||(40904-41072)
[»] chr2 (18 HSPs)
chr2 (15-182)||(40737804-40737972)
chr2 (15-187)||(21198088-21198261)
chr2 (15-182)||(34726277-34726445)
chr2 (15-188)||(12033777-12033950)
chr2 (15-176)||(29557425-29557587)
chr2 (61-188)||(13029104-13029232)
chr2 (15-154)||(38213428-38213568)
chr2 (13-113)||(2611350-2611451)
chr2 (61-182)||(17852749-17852870)
chr2 (61-168)||(5936769-5936877)
chr2 (13-176)||(6431526-6431690)
chr2 (65-176)||(32084116-32084228)
chr2 (15-119)||(18075733-18075838)
chr2 (52-119)||(39133295-39133363)
chr2 (98-182)||(36985416-36985500)
chr2 (52-119)||(7592532-7592600)
chr2 (81-155)||(43616336-43616411)
chr2 (61-98)||(36983261-36983298)
[»] chr5 (17 HSPs)
chr5 (15-182)||(4049393-4049561)
chr5 (15-182)||(42062258-42062426)
chr5 (15-189)||(31271385-31271560)
chr5 (43-182)||(6644137-6644277)
chr5 (15-182)||(4101181-4101351)
chr5 (61-179)||(12880466-12880585)
chr5 (61-182)||(9163432-9163554)
chr5 (61-156)||(7035192-7035288)
chr5 (61-189)||(7078987-7079116)
chr5 (13-182)||(18158382-18158552)
chr5 (15-165)||(42288459-42288605)
chr5 (52-98)||(14084468-14084514)
chr5 (15-72)||(491344-491401)
chr5 (130-182)||(11877466-11877518)
chr5 (13-93)||(32253248-32253328)
chr5 (13-188)||(40083981-40084157)
chr5 (140-176)||(31624132-31624168)
[»] scaffold0005 (1 HSPs)
scaffold0005 (21-119)||(218230-218329)
[»] scaffold0067 (1 HSPs)
scaffold0067 (53-182)||(14329-14459)
[»] scaffold0065 (1 HSPs)
scaffold0065 (15-182)||(39978-40147)
[»] scaffold0259 (1 HSPs)
scaffold0259 (15-115)||(24848-24949)
[»] scaffold0217 (1 HSPs)
scaffold0217 (15-119)||(15632-15739)
[»] scaffold0163 (1 HSPs)
scaffold0163 (15-97)||(35864-35946)
[»] scaffold0275 (1 HSPs)
scaffold0275 (127-176)||(9161-9210)


Alignment Details
Target: scaffold0288 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 12 - 263
Target Start/End: Complemental strand, 7323 - 7071
Alignment:
Q  12 atgaagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaa-ggcataggccagact 110  Q
    |||||||||||  |||||||||||| |||||||||||||||||||||||||| |||| ||| ||||||||||| || ||||||| ||||||| |||||||    
T  7323 atgaagtaggctagtaaataggttgtcagtccaggtcaagcttttaaataggtcagatcaggccaaaataataagcatatgaaaaggcatagaccagact 7224  T
Q  111 caggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaactctactgttatcatttatagagggaatc 210  Q
     |||| |||       |||||||||||| |||||||||||||||||||||||||  |||||||||| |||||| ||||||||||||||||||||||||||    
T  7223 aaggcttgcagaaaattttgtaggtcaggctcaggcctatcaaagcatggtctgatctgacctattcccaactttactgttatcatttatagagggaatc 7124  T
Q  211 gtttatgaacatagaattaaccaaggtaaaaagactgtccgaatttccttttc 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7123 gtttatgaacatagaattaaccaaggtaaaaagactgtccgaatttccttttc 7071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 36684844 - 36684676
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| || ||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||| |||||    
T  36684844 aagtaggcctgtaaataggctttcaggccaggccaggcttttaaataggccaggccaggccaaaataataggcctatgaaaggccataggccaggctcag 36684745  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    ||||||       || ||||| ||| ||||||||||||||||| ||| |||||||| |||||| |||||    
T  36684744 gcctgcaaaaattttcgtaggccaggctcaggcctatcaaagcgtggcctggcctggcctattcccaac 36684676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 15 - 188
Target Start/End: Complemental strand, 26241439 - 26241265
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| || ||||||||||||||||| |||| |||||| ||||||||||||||||| |||||||||| |||||    
T  26241439 aagtaggcctgtaaataggctttcaggccaggccaggcttttaaataggccaggccaggccaaaaaaataggcctatgaaaggccataggccaggctcag 26241340  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaactctact 188  Q
    ||||||       || ||||| ||| ||||||||||||||||| ||| |||||||| |||||| ||||| |||||    
T  26241339 gcctgcaaaaaatttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaaccctact 26241265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 51 - 168
Target Start/End: Complemental strand, 12615256 - 12615138
Alignment:
Q  51 gcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggccta 149  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||       || ||||||||| ||||||||||    
T  12615256 gcttttaaataggccaggccagaccaaaataataggcctatgaaaggccataggccaggctcaggcctgcaaattttttcgtaggtcaggctcaggccta 12615157  T
Q  150 tcaaagcatggtctggcct 168  Q
    ||||||| ||| |||||||    
T  12615156 tcaaagcctggcctggcct 12615138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 11989201 - 11989033
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| ||   ||||||||||| ||| |||| |||||||||||||||||||||||| |||||| ||| |||||    
T  11989201 aagtaggcctgtaaataggctttcaggccaggccagaattttaaataggtcaggccaggccaaaataataggcctatgaaaggccataggtcaggctcag 11989102  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    ||||||       || || || ||| ||||||||||||||||||||| |||||||| |||||| |||||    
T  11989101 gcctgcaaattttttcgttggccaggctcaggcctatcaaagcatggcctggcctggcctattcccaac 11989033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 36054595 - 36054769
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||  ||  |||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||| |||||    
T  36054595 aagtaggcctgtaaataggctttcaggccagaccagacttttaaataggccaggccagaccaaaaaaataggcctatgaaaggccataggccaggctcag 36054694  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaactctact 188  Q
    ||| ||       || ||||| ||| ||||||||||||||||| ||| ||||  || |||||| ||||| |||||    
T  36054695 gccagcaaattttttcgtaggccaggctcaggcctatcaaagcctggcctggtatggcctattcccaaccctact 36054769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 16383884 - 16383987
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| || ||||||||||||||||| |||| |||||| ||||||||||||||||| |||||||||| |||||    
T  16383884 aagtaggcctgtaaataggctttcaggccaggccaggcttttaaataggccaggccaggccaaaaaaataggcctatgaaaggccataggccaggctcag 16383983  T
Q  114 gcct 117  Q
    ||||    
T  16383984 gcct 16383987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 187
Target Start/End: Complemental strand, 23950414 - 23950287
Alignment:
Q  61 aggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatg 159  Q
    ||||||| ||||||||||| ||||||||||||||||| |||||||||| |||||||||||       || ||||| ||| ||||||| ||||||||| ||    
T  23950414 aggccaggccagaccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaattttttcgtaggccaggctcaggcttatcaaagcctg 23950315  T
Q  160 gtctggcctgacctatttccaactctac 187  Q
    | |||||||| |||||| ||||||||||    
T  23950314 gcctggcctggcctattcccaactctac 23950287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 42 - 167
Target Start/End: Original strand, 33303759 - 33303886
Alignment:
Q  42 ccaggtcaagcttttaaataggccagaccagaccaaaataata-ggcctatgaaagg-cataggccagactcaggcctgcnnnnnnntttgtaggtcaga 139  Q
    ||||| || ||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||| |||||||||||       || ||||| |||     
T  33303759 ccaggccaggcttttaaataggccaggccagaccaaaataatagggcctatgaaaggccataggccaggctcaggcctgcaaaaattttcgtaggccagg 33303858  T
Q  140 ctcaggcctatcaaagcatggtctggcc 167  Q
    ||||||||||||||||| ||| ||||||    
T  33303859 ctcaggcctatcaaagcctggcctggcc 33303886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 182
Target Start/End: Original strand, 32551571 - 32551693
Alignment:
Q  61 aggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatg 159  Q
    ||||||| ||||||||||||||||||| ||||||||| |||||||||| |||| ||||||       || ||||| ||| ||||||||||||||||| ||    
T  32551571 aggccaggccagaccaaaataataggcatatgaaaggccataggccaggctcaagcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctg 32551670  T
Q  160 gtctggcctgacctatttccaac 182  Q
    | |||| |||||||||| |||||    
T  32551671 gcctggtctgacctattcccaac 32551693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 167
Target Start/End: Complemental strand, 10921237 - 10921087
Alignment:
Q  17 gtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggc 115  Q
    ||||||||||||||||| |  ||| | || || ||||| |||||||||||| |||| |||||| |||||| |||||||||| |||||||||  || ||||    
T  10921237 gtaggcctgtaaataggctttcaggctag-tccagcttgtaaataggccaggccaggccaaaaaaataggtctatgaaaggccataggccaagcttaggc 10921139  T
Q  116 ctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcc 167  Q
    ||||       || ||||||||| ||||||||||||||||| ||| ||||||    
T  10921138 ctgcaaattttttcgtaggtcaggctcaggcctatcaaagcctggcctggcc 10921087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 7323143 - 7323317
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  |||  |||| ||  | ||||||||||||||  |||  ||||| ||||||||||||||||| |||| ||||| |||||    
T  7323143 aagtaggcctgtaaataggctttcaggtcaggccagacatttaaataggccaggacaggtcaaaaaaataggcctatgaaaggccatatgccaggctcag 7323242  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaactctact 188  Q
    ||||||       || |||||  || ||||||||||| ||||  ||| |||||||| |||||| ||||| |||||    
T  7323243 gcctgcaaattttttcgtaggctaggctcaggcctattaaagtctggcctggcctggcctattcccaaccctact 7323317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 30577178 - 30577079
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    |||||||||| |||||||| |  ||| ||||| || ||||||||||||| ||  | || |||||| ||||||||||||||||| |||||||||| |||||    
T  30577178 aagtaggcctctaaataggctttcaggccaggccaggcttttaaataggtcaagctaggccaaaaaaataggcctatgaaaggccataggccaggctcag 30577079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 10954464 - 10954406
Alignment:
Q  61 aggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcctgc 119  Q
    ||||||||||||||||||| || |||||||||||||| |||||||||| ||||| |||||    
T  10954464 aggccagaccagaccaaaa-aaaaggcctatgaaaggccataggccaggctcagtcctgc 10954406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 10962469 - 10962411
Alignment:
Q  61 aggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcctgc 119  Q
    ||||||||||||||||||| || |||||||||||||| |||||||||| ||||| |||||    
T  10962469 aggccagaccagaccaaaa-aaaaggcctatgaaaggccataggccaggctcagtcctgc 10962411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 14540997 - 14541044
Alignment:
Q  133 ggtcagactcaggcctatcaaagcatggtctggcctgacctatttcca 180  Q
    |||||| ||||| |||||||||| ||||||||||||| ||||||||||    
T  14540997 ggtcaggctcagacctatcaaagtatggtctggcctggcctatttcca 14541044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 39506697 - 39506755
Alignment:
Q  130 gtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaactctact 188  Q
    ||||| ||| ||||||||| ||||||  |||||||||||| |||||||||||| |||||    
T  39506697 gtaggccaggctcaggcctttcaaagtctggtctggcctggcctatttccaaccctact 39506755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 4111336 - 4111504
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| || ||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||| |||||    
T  4111336 aagtaggcctgtaaataggctttcaggccaggccaggcttttaaataggccaggccaggccaaaataataggcctatgaaaggtcataggccaggctcag 4111435  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    ||||||       || ||||| ||| ||||||||||||||||| ||| |||||||| |||||| |||||    
T  4111436 gcctgcaaaaattttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaac 4111504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 13276732 - 13276564
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| || ||||||||||||||||| |||| |||||| ||||||||||||||||| |||||||||| |||||    
T  13276732 aagtaggcctgtaaataggctttcaggccaggccaggcttttaaataggccaggccaggccaaaaaaataggcctatgaaaggccataggccaggctcag 13276633  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    ||||||       || ||||| ||| ||||||||||||||||| ||| |||||||| |||||| |||||    
T  13276632 gcctgcaaaatttttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaac 13276564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 28890860 - 28891028
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| || ||||||||||||||||| |||| |||||| ||||||||||||||||| |||||||||| |||||    
T  28890860 aagtaggcctgtaaataggctttcaggccaggccaggcttttaaataggccaggccaggccaaaaaaataggcctatgaaaggccataggccaggctcag 28890959  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    ||||||       || ||||| ||| ||||||||||||||||| ||| |||||||| |||||| |||||    
T  28890960 gcctgcaaaatttttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaac 28891028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 3027236 - 3027404
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| || ||||||||||||| |||  ||| |||||||||||||||||||||||| |||||||||| |||||    
T  3027236 aagtaggcctgtaaataggctttcaggccaggccaggcttttaaataggtcaggtcaggccaaaataataggcctatgaaaggccataggccaggctcag 3027335  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    ||||||       || ||||| ||| ||||||||||||||||| ||| |||||||| |||||| |||||    
T  3027336 gcctgcaaaaattttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaac 3027404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 31803068 - 31803236
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| |||||| | ||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||| |||||    
T  31803068 aagtaggcctgtaaataggctttcaggccaggttaggcttttaaataggccagacaagaccaaaaaaataggcctatgaaaggccataggccaggctcag 31803167  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
     |||||       || ||||||||| |||| | |||||||||| ||  |||| |||||||||| |||||    
T  31803168 acctgcaaattttttcgtaggtcaggctcaagtctatcaaagcctgacctggtctgacctattcccaac 31803236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 5153488 - 5153320
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| || ||||||||||||||||| |||| |||||| ||||||||||||||||| |||||||||| ||||     
T  5153488 aagtaggcctgtaaataggctttcaggccaggccaggcttttaaataggccaggccaggccaaaaaaataggcctatgaaaggccataggccaggctcaa 5153389  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    ||||||       || ||||| ||| ||||| | ||||||||| ||| |||||||| |||||| |||||    
T  5153388 gcctgcaaaatttttcgtaggccaggctcagacttatcaaagcctggcctggcctggcctattcccaac 5153320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 156
Target Start/End: Complemental strand, 27613447 - 27613305
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| ||  ||||||||||||| || |||  |||||| ||||||||||||||||| |||||||||| |||||    
T  27613447 aagtaggcctgtaaataggctttcaggccaggccagacttttaaataggcaaggccaagccaaaaaaataggcctatgaaaggccataggccaggctcag 27613348  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagc 156  Q
    ||||||       || ||||||||| |||||||||||||||||    
T  27613347 gcctgcaaattttttcgtaggtcaggctcaggcctatcaaagc 27613305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 3257286 - 3257181
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| ||  |||||||||||||||  |||| |||||| ||||||||||||||||| |||||||||| |||||    
T  3257286 aagtaggcctgtaaataggctttcaggccaggccagacttttaaataggccaagccaggccaaaaaaataggcctatgaaaggccataggccaggctcag 3257187  T
Q  114 gcctgc 119  Q
    ||||||    
T  3257186 gcctgc 3257181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 182
Target Start/End: Original strand, 8437570 - 8437692
Alignment:
Q  61 aggccagaccagaccaaaataataggcctatgaaaggc-ataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatg 159  Q
    ||||||| |||| |||||| |||||||||||||||||| ||||||||| |||||||||||       || ||||| ||||||||||||||||||||  ||    
T  8437570 aggccaggccaggccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaattttttcgtaggccagactcaggcctatcaaagtctg 8437669  T
Q  160 gtctggcctgacctatttccaac 182  Q
    | |||||||| |||||| |||||    
T  8437670 gcctggcctggcctattcccaac 8437692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 3729004 - 3729172
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaaggca-taggccagactcag 113  Q
    ||||||| ||||||||||| |  ||| ||||  ||  |||||||||||||||  |||| |||||| ||||||||||||||| ||  |||||||| |||||    
T  3729004 aagtaggtctgtaaataggctttcaggccagaccagacttttaaataggccaagccaggccaaaaaaataggcctatgaaatgccgtaggccaggctcag 3729103  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    ||||||       || ||||| ||| ||||||||||||||||| ||| |||||||| |||||| |||||    
T  3729104 gcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaac 3729172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 42 - 155
Target Start/End: Complemental strand, 25436711 - 25436596
Alignment:
Q  42 ccaggtcaagcttttaaataggccagaccagac-caaaataataggcctatgaaagg-cataggccagactcaggcctgcnnnnnnntttgtaggtcaga 139  Q
    |||||||| ||||||||||||||||||||||||  |||| ||||||| || |||||| |||||||||||||||||||||         |||||||||||     
T  25436711 ccaggtcaggcttttaaataggccagaccagacaaaaaaaaataggcatacgaaaggccataggccagactcaggcctgtaaaaaaaattgtaggtcagg 25436612  T
Q  140 ctcaggcctatcaaag 155  Q
    ||||||||||||||||    
T  25436611 ctcaggcctatcaaag 25436596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 176
Target Start/End: Original strand, 479167 - 479293
Alignment:
Q  51 gcttttaaataggccagaccagaccaaaataataggcctatgaaaggc-ataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggccta 149  Q
    |||||||||||||||||| ||| || | | ||  ||||||||| || | ||||||||||||||||||||        || ||||| ||| ||||||||||    
T  479167 gcttttaaataggccagatcaggcctagaaaaacggcctatgatagaccataggccagactcaggcctgtaaattttttcgtaggccaggctcaggccta 479266  T
Q  150 tcaaagcatggtctggcctgacctatt 176  Q
    ||||||| |||||||||||||||||||    
T  479267 tcaaagcctggtctggcctgacctatt 479293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 1101362 - 1101192
Alignment:
Q  13 tgaagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactc 111  Q
    |||||||||||||||| |||| |  ||| ||||  || ||||||||||||||||| |||| || ||| ||  ||||||||| ||| |||||||||| |||    
T  1101362 tgaagtaggcctgtaagtaggctttcaggccagtccaggcttttaaataggccaggccaggcctaaaaaaacggcctatgataggccataggccaggctc 1101263  T
Q  112 aggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    |||| ||        || ||||| ||| ||||||||||||||||| ||| |||||||| |||||| |||||    
T  1101262 aggcttgtgatttatttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaac 1101192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 24012049 - 24011949
Alignment:
Q  69 ccagaccaaaataataggcctatgaaagg-cataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcc 167  Q
    |||| |||||||||||||||||||||||| |||||||||| ||| |||||||       || ||||| ||| ||||||||||||||||| ||| ||||||    
T  24012049 ccaggccaaaataataggcctatgaaaggccataggccaggctcgggcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctggcctggcc 24011950  T
Q  168 t 168  Q
    |    
T  24011949 t 24011949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 188
Target Start/End: Original strand, 12296939 - 12297052
Alignment:
Q  76 aaaataataggcctatgaaagg-cataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgaccta 174  Q
    |||| ||||||||||||||||| |||||||||| || ||||||||       || ||||| ||||||||| ||||||||||  ||| |||||||| ||||    
T  12296939 aaaaaaataggcctatgaaaggccataggccaggcttaggcctgcaaattttttcgtaggccagactcagacctatcaaagtctggcctggcctggccta 12297038  T
Q  175 tttccaactctact 188  Q
    || ||||| |||||    
T  12297039 ttcccaaccctact 12297052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 17156399 - 17156295
Alignment:
Q  12 atgaagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagact 110  Q
    |||||||||||||||||||||| |  ||| ||||  || ||||||||||||| ||||||||||||| | ||  ||||||| | ||| || ||||||||||    
T  17156399 atgaagtaggcctgtaaataggctttcaggccagtccaggcttttaaataggtcagaccagaccaagaaaaacggcctataataggccacaggccagact 17156300  T
Q  111 caggc 115  Q
    |||||    
T  17156299 caggc 17156295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 176
Target Start/End: Original strand, 32187233 - 32187398
Alignment:
Q  12 atgaagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaaggc-ataggccagact 110  Q
    |||||||||| |||||| |||| |  ||| ||||  || ||||||||||||| ||| |||| || | | ||  ||||||||| |||| ||||||||| ||    
T  32187233 atgaagtaggtctgtaagtaggctttcaggccagtccaggcttttaaataggtcaggccaggcctagaaaaacggcctatgataggccataggccaggct 32187332  T
Q  111 caggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatt 176  Q
    ||||| ||        || ||||| ||| ||||||||||||||||||||| |||||||| ||||||    
T  32187333 caggcttgtgatttatttcgtaggccaggctcaggcctatcaaagcatggcctggcctggcctatt 32187398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 14500134 - 14500071
Alignment:
Q  53 ttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggc 115  Q
    ||||||||||||||||||||||| ||| ||  ||||||||| ||| |||||| |||||||||||    
T  14500134 ttttaaataggccagaccagacctaaaaaaacggcctatgataggccataggacagactcaggc 14500071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 24848944 - 24848886
Alignment:
Q  130 gtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaactctact 188  Q
    ||||| ||||||||||||||||||||  ||| || ||||| |||||||||||| |||||    
T  24848944 gtaggccagactcaggcctatcaaagtctggcctcgcctggcctatttccaaccctact 24848886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 33627926 - 33627976
Alignment:
Q  48 caagcttttaaataggccagaccagaccaaaataataggcctatgaaaggc 98  Q
    |||||||||||||||| |||  |||||||||| ||||| ||||||||||||    
T  33627926 caagcttttaaataggtcaggtcagaccaaaaaaatagtcctatgaaaggc 33627976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 1449863 - 1449937
Alignment:
Q  83 taggcctatgaaaggc-ataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagc 156  Q
    |||||||||||||||| ||||||||||||||||||||        || ||||  |||||||||||||||||||||    
T  1449863 taggcctatgaaaggccataggccagactcaggcctgtaaattttttcgtagaccagactcaggcctatcaaagc 1449937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 23645946 - 23645897
Alignment:
Q  69 ccagaccaaaataataggcctatgaaagg-cataggccagactcaggcct 117  Q
    |||| |||||| ||||||||||||||||| |||||||||| |||||||||    
T  23645946 ccaggccaaaaaaataggcctatgaaaggccataggccaggctcaggcct 23645897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 34705263 - 34705431
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| || ||||||||||||||||| |||| |||||| ||||||||||||||||| |||||||||| |||||    
T  34705263 aagtaggcctgtaaataggctttcaggccaggccaggcttttaaataggccaggccaggccaaaaaaataggcctatgaaaggccataggccaggctcag 34705362  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    ||||||       |||||||| ||| ||||||||||||||||| ||| |||||||| |||||| |||||    
T  34705363 gcctgcaaaaaattttgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaac 34705431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 39391222 - 39391054
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| || ||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||| |||||    
T  39391222 aagtaggcctgtaaataggctttcagaccaggccaggcttttaaataggccaggccaggccaaaataataggcctatgaaaggccataggccaggctcag 39391123  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    ||||||       || ||||| ||| ||||||||||||||||| ||| |||||||| |||||| |||||    
T  39391122 gcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaac 39391054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 47597038 - 47597212
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    |||||||||||||| |||| |  ||| ||||  || ||||||||||||||||| |||| |||||| ||||||||||||||||| |||||||||| |||||    
T  47597038 aagtaggcctgtaattaggctttcaggccagaccaggcttttaaataggccaggccaggccaaaaaaataggcctatgaaaggccataggccaggctcag 47597137  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaactctact 188  Q
    ||||||       || ||||| ||| ||||||||||||||||| |||||||||||| |||||| ||||| |||||    
T  47597138 gcctgcaaaaaatttcgtaggccaggctcaggcctatcaaagcctggtctggcctggcctattcccaaccctact 47597212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 168
Target Start/End: Original strand, 52174759 - 52174913
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| || ||||||||||||||||| |||| |||||| ||||||||||||||||| |||||||||| |||||    
T  52174759 aagtaggcctgtaaataggctttcaggccaggccaggcttttaaataggccaggccaggccaaaaaaataggcctatgaaaggccataggccaggctcag 52174858  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcct 168  Q
    ||||||       || ||||| ||||||||||||||||||||| ||| |||||||    
T  52174859 gcctgcaaaaattttcgtaggccagactcaggcctatcaaagcctggcctggcct 52174913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 1782638 - 1782806
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| || ||||||||||||||||| |||| |||||| ||||||||||||||||| |||||||||| || ||    
T  1782638 aagtaggcctgtaaataggctttcaggccaggccaggcttttaaataggccaggccaggccaaaaaaataggcctatgaaaggccataggccaggcttag 1782737  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    ||||||       || ||||| ||| ||||||||||||||||| ||| |||||||| |||||| |||||    
T  1782738 gcctgcaaaatttttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaac 1782806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 33249584 - 33249416
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| || ||||||||||||| |||||||| |||||| ||||||||||||||||| |||||||||| |||||    
T  33249584 aagtaggcctgtaaataggctttcaggccaggccaggcttttaaataggtcagaccaggccaaaaaaataggcctatgaaaggccataggccaggctcag 33249485  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    ||||||       || ||||| ||| ||||||||||||||||| |||  ||||||| |||||| |||||    
T  33249484 gcctgcaaaatttttcgtaggccaggctcaggcctatcaaagcctggcttggcctggcctattcccaac 33249416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 20647749 - 20647923
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaaggc-ataggccagactcag 113  Q
    ||||||||||||||||||  |  ||| ||||| ||  |||||||||||| ||| |||| |||||| |||||||||||||||||| ||||||||| |||||    
T  20647749 aagtaggcctgtaaatagactttcaggccaggccagacttttaaataggtcaggccaggccaaaaaaataggcctatgaaaggccataggccaggctcag 20647848  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaactctact 188  Q
     |||||       || ||||| ||| ||||||||||||||||| ||| ||||||||||||||||||||| |||||    
T  20647849 acctgcaaaaattttcgtaggccaggctcaggcctatcaaagcctggcctggcctgacctatttccaaccctact 20647923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 188
Target Start/End: Complemental strand, 28793820 - 28793646
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaaggc-ataggccagactcag 113  Q
    |||||||||| |||||||| |  ||| || || ||  |||||||||||||||| |||| |||||| |||||| ||||||||||| ||||||||| |||||    
T  28793820 aagtaggcctataaataggctttcaggcctggccagacttttaaataggccaggccaggccaaaaaaataggtctatgaaaggccataggccaggctcag 28793721  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaactctact 188  Q
    ||||||       || ||||| ||| ||||||||||||||||| ||| ||||||||||||||||||||| |||||    
T  28793720 gcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctggcctggcctgacctatttccaaccctact 28793646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 40000733 - 40000901
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||  || |||| |||||||||||| |||| |||||| ||||||||||||||||| |||||||||| |||||    
T  40000733 aagtaggcctgtaaataggctttcaggccagaccaggcttataaataggccaggccaggccaaaaaaataggcctatgaaaggccataggccaggctcag 40000832  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    ||||||       || ||||| ||| ||||||||||||||||| ||| |||||||| |||||| |||||    
T  40000833 gcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaac 40000901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 168
Target Start/End: Complemental strand, 54650613 - 54650459
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| || ||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||| |||||    
T  54650613 aagtaggcctgtaaataggctttcaggccagggcaggcttttaaataggccaggccagaccaaaaaaataggcctataaaaggccataggccaggctcag 54650514  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcct 168  Q
    ||||||       || ||||| ||| ||||| ||||||||||| ||| |||||||    
T  54650513 gcctgcaaaatttttcgtaggccaggctcagacctatcaaagcctggcctggcct 54650459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 61 - 188
Target Start/End: Complemental strand, 29076990 - 29076862
Alignment:
Q  61 aggccagaccagaccaaaataataggcctatgaaaggc-ataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatg 159  Q
    ||||||| |||| ||||||||||||||||||||||||| ||||||||| |||||||||||       || ||||| ||| ||||||||||||||||| ||    
T  29076990 aggccaggccaggccaaaataataggcctatgaaaggccataggccaggctcaggcctgcaaaaattttcgtaggccaggctcaggcctatcaaagcctg 29076891  T
Q  160 gtctggcctgacctatttccaactctact 188  Q
    | |||||||| |||||| ||||| |||||    
T  29076890 gcctggcctggcctattcccaaccctact 29076862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 61 - 182
Target Start/End: Complemental strand, 19421088 - 19420966
Alignment:
Q  61 aggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatg 159  Q
    ||||||| |||| |||||||||||||||||||||||| |||||||||| |||||||||||       || ||||| ||| ||||||||||||||||| ||    
T  19421088 aggccaggccaggccaaaataataggcctatgaaaggccataggccaggctcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctg 19420989  T
Q  160 gtctggcctgacctatttccaac 182  Q
    | |||||||| |||||| |||||    
T  19420988 gcctggcctggcctattcccaac 19420966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 168
Target Start/End: Original strand, 34422620 - 34422774
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| ||  |||||||||||||||| |||| |||||| ||||||||| ||||||| |||||||||| |||||    
T  34422620 aagtaggcctgtaaataggctttcaggccaggccagacttttaaataggccaggccaggccaaaaaaataggcctgtgaaaggccataggccaggctcag 34422719  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcct 168  Q
    ||||||       || ||||| ||| ||| ||||||||||||| ||| |||||||    
T  34422720 gcctgcatattttttcgtaggccaggctcgggcctatcaaagcctggcctggcct 34422774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 46068158 - 46068053
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatg-aaaggcataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||  || |||||||||||| |||||||||||||||| |||||||||||| |||| |||||||||| |||||    
T  46068158 aagtaggcctgtaaataggctttcaggccagaccaggcttttaaatagcccagaccagaccaaaaaaataggcctatgaaaagccataggccaggctcag 46068059  T
Q  114 gcctgc 119  Q
    ||||||    
T  46068058 gcctgc 46068053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 40488999 - 40489166
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| ||  ||||||||||||||||  ||| |||||| |||| |||||||||||| |||||||||| |||||    
T  40488999 aagtaggcctgtaaataggctttcaggccaggccagacttttaaataggccaggtcaggccaaaaaaataagcctatgaaaggccataggccaggctcag 40489098  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaa 181  Q
    |||||        || ||| | ||| ||||||||||||||||| |||||||||||  |||||| ||||    
T  40489099 gcctggaaattttttcgtaagccaggctcaggcctatcaaagcctggtctggcctagcctattcccaa 40489166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 51 - 156
Target Start/End: Complemental strand, 47844631 - 47844525
Alignment:
Q  51 gcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggccta 149  Q
    |||||||||||||||||| ||| |||||| ||||||||||||||||| |||||||||| ||||| |||||       || ||||| ||||||||||||||    
T  47844631 gcttttaaataggccagatcaggccaaaaaaataggcctatgaaaggccataggccaggctcagacctgcaaattttttcgtaggccagactcaggccta 47844532  T
Q  150 tcaaagc 156  Q
    |||||||    
T  47844531 tcaaagc 47844525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 188
Target Start/End: Complemental strand, 55008263 - 55008094
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||  ||| |||||||||||| |||||| |||||||| ||||||||||||||||| || | ||||| |||||    
T  55008263 aagtaggcctgtaaataggctttcaggccagaccaaacttttaaataggtcagacctgaccaaaaaaataggcctatgaaaggccacaagccaggctcag 55008164  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaactctact 188  Q
    ||||||       || ||||| ||| ||||| |||||||||     ||||||||||||||||| ||||| |||||    
T  55008163 gcctgcaaattttttcgtaggacaggctcagacctatcaaa-----gtctggcctgacctattcccaaccctact 55008094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 46181839 - 46181913
Alignment:
Q  46 gtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaag-gcataggccagactcaggcctgc 119  Q
    |||| ||||||||||||| ||||||||||||||| ||||||||||||||||  |||||| |||||||||||||||    
T  46181839 gtcaggcttttaaataggtcagaccagaccaaaaaaataggcctatgaaagaccataggtcagactcaggcctgc 46181913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 69 - 182
Target Start/End: Original strand, 24540984 - 24541098
Alignment:
Q  69 ccagaccaaaataataggcctatgaaagg-cataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcc 167  Q
    ||||||||||| ||||||||||||||||| |||||||||| |||||||||||       || ||||| ||| ||||||||||||||||| ||| |||||     
T  24540984 ccagaccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctggcctggct 24541083  T
Q  168 tgacctatttccaac 182  Q
    || |||||| |||||    
T  24541084 tggcctattcccaac 24541098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 156
Target Start/End: Complemental strand, 25537008 - 25536866
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||  || ||||||||||||| |||  ||  |||||| ||||||||||||||||| ||||| |||| |||||    
T  25537008 aagtaggcctgtaaataggctttcaggccagaccaggcttttaaataggtcaggtcatgccaaaaaaataggcctatgaaaggtcatagaccaggctcag 25536909  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagc 156  Q
    ||||||       || ||||| |||||||||||||||||||||    
T  25536908 gcctgcaaattttttcgtaggccagactcaggcctatcaaagc 25536866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 169
Target Start/End: Complemental strand, 34636463 - 34636354
Alignment:
Q  61 aggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatg 159  Q
    ||||||| ||||||||||| ||||||||||||||||| |||||||||| |||||||||||       || ||||| ||| ||||||||||||||||| ||    
T  34636463 aggccaggccagaccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctg 34636364  T
Q  160 gtctggcctg 169  Q
      ||||||||    
T  34636363 acctggcctg 34636354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 40000487 - 40000580
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccag 107  Q
    ||||||||||||||||||| |  ||| ||||  || |||| |||||||||||| |||| |||||| ||||||||||||||||| ||||||||||    
T  40000487 aagtaggcctgtaaataggctttcaggccagaccaggcttataaataggccaggccaggccaaaaaaataggcctatgaaaggccataggccag 40000580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 119
Target Start/End: Complemental strand, 46116561 - 46116484
Alignment:
Q  43 caggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcctgc 119  Q
    |||||||  ||||||||||||||||||||| | |||| ||||||||||||||||| |||||||||| ||||| |||||    
T  46116561 caggtcagccttttaaataggccagaccaggctaaaaaaataggcctatgaaaggccataggccaggctcagacctgc 46116484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 168
Target Start/End: Complemental strand, 33370536 - 33370428
Alignment:
Q  61 aggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatg 159  Q
    ||||||| |||| |||||| ||||||||||||||||| |||||||||| || ||||||||       || ||| | ||||||||||||||||||||| ||    
T  33370536 aggccaggccaggccaaaaaaataggcctatgaaaggtcataggccaggcttaggcctgcaaattttttcgtatgccagactcaggcctatcaaagcctg 33370437  T
Q  160 gtctggcct 168  Q
    | |||||||    
T  33370436 gcctggcct 33370428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 41873554 - 41873473
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaag 96  Q
    ||||||||||||||||||  |  ||| ||||| ||  |||||||||||||||| ||||||||||| ||||||||||| ||||    
T  41873554 aagtaggcctgtaaatagactttcaggccaggccatacttttaaataggccaggccagaccaaaaaaataggcctataaaag 41873473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 33069392 - 33069471
Alignment:
Q  19 aggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaaggc 98  Q
    ||||||||||||||| |  ||| ||||| ||  |||||||||||| |||  ||| |||||| ||||||||||||||||||    
T  33069392 aggcctgtaaataggctttcaggccaggccagacttttaaataggtcaggtcaggccaaaaaaataggcctatgaaaggc 33069471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 39171418 - 39171476
Alignment:
Q  61 aggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcctgc 119  Q
    |||||||||||||  |||| ||||||||||||||||| |||||||||| |||||||||||    
T  39171418 aggccagaccagaaaaaaa-aataggcctatgaaaggccataggccaggctcaggcctgc 39171476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 41636339 - 41636293
Alignment:
Q  130 gtaggtcagactcaggcctatcaaagcatggtctggcctgacctatt 176  Q
    ||||| ||||||||||||||||||||| ||| |||||||| ||||||    
T  41636339 gtaggccagactcaggcctatcaaagcctggcctggcctggcctatt 41636293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 182
Target Start/End: Complemental strand, 13596267 - 13596165
Alignment:
Q  81 aataggcctatgaaaggc-ataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttcc 179  Q
    |||||||||||||||||| |||  |||| ||||||| |||       || ||||| ||| ||||||||||||||||| ||| |||||||| |||||| ||    
T  13596267 aataggcctatgaaaggccatataccaggctcaggcttgcaaattttttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattccc 13596168  T
Q  180 aac 182  Q
    |||    
T  13596167 aac 13596165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 19708925 - 19709099
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| || ||||||||||||||||| |||| |||||| ||||||||||||||||| |||||||||| |||||    
T  19708925 aagtaggcctgtaaataggctttcaggccaggccaggcttttaaataggccaggccaggccaaaaaaataggcctatgaaaggccataggccaggctcag 19709024  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaactctact 188  Q
    ||||||       || ||||| ||| ||||||||||||||||| ||| |||||||| |||||| ||||| |||||    
T  19709025 gcctgcaaaaaatttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaaccctact 19709099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 39860414 - 39860582
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| || ||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||| |||||    
T  39860414 aagtaggcctgtaaataggctttcaggccaggccaggcttttaaataggccaggccaggccaaaataataggcctatgaaaggccataggccaggctcag 39860513  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    ||||||       || ||||  ||| ||||||||||||||||| ||| |||||||| |||||| |||||    
T  39860514 gcctgcaaattttttcgtagaccaggctcaggcctatcaaagcctggcctggcctggcctattcccaac 39860582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 15 - 187
Target Start/End: Complemental strand, 52222897 - 52222724
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| || ||||||||||||||||| |||| |||||| ||||||||||||||||| |||||||||| || ||    
T  52222897 aagtaggcctgtaaataggctttcaggccaggccaggcttttaaataggccaggccaggccaaaaaaataggcctatgaaaggccataggccaggcttag 52222798  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaactctac 187  Q
    ||||||       || ||||| ||| ||||||||||||||||| ||| |||||||| |||||| ||||| ||||    
T  52222797 gcctgcaaaatttttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaaccctac 52222724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 33785366 - 33785198
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| || ||||||||||||||||| |||| |||||| ||||||||||||||||| |||||||||| ||||     
T  33785366 aagtaggcctgtaaataggctttcaggccaggccaggcttttaaataggccaggccaggccaaaaaaataggcctatgaaaggccataggccaggctcaa 33785267  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    ||||||       || ||||| ||| ||||||||||||||||| ||| |||||||| |||||| |||||    
T  33785266 gcctgcaaaaaatttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaac 33785198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 181
Target Start/End: Complemental strand, 8417399 - 8417232
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| || ||||||||||||||||| |||| |||||| ||||||||||||||||| |||||||||| || ||    
T  8417399 aagtaggcctgtaaataggctttcaggccaggccaggcttttaaataggccaggccaggccaaaaaaataggcctatgaaaggccataggccaggcttag 8417300  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaa 181  Q
    ||||||       || ||||| ||| ||||||||||||||||| ||| |||||||| |||||| ||||    
T  8417299 gcctgcaaaatttttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaa 8417232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 6891307 - 6891475
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaaggc-ataggccagactcag 113  Q
    ||||||||||||||||||| |  |||  |||| ||  ||||||||||||||||||||| |||||| ||||||| |||||||||| ||||||||| |||||    
T  6891307 aagtaggcctgtaaataggctttcaggtcaggccagacttttaaataggccagaccaggccaaaaaaataggcttatgaaaggctataggccaggctcag 6891406  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    ||||||       || ||||| ||| ||||||||||||||||| ||| |||||||  |||||| |||||    
T  6891407 gcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctggcctggcctagcctattcccaac 6891475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 156
Target Start/End: Complemental strand, 46846930 - 46846788
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| |||||  | ||||||||||||||||| |||| |||||| ||||||||||||||||| |||||||||| |||||    
T  46846930 aagtaggcctgtaaataggctttcaggccaggctaggcttttaaataggccaggccaggccaaaaaaataggcctatgaaaggccataggccaggctcag 46846831  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagc 156  Q
    ||||||       || ||||| ||| |||||||||||||||||    
T  46846830 gcctgcaaaatttttcgtaggccaggctcaggcctatcaaagc 46846788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 51 - 182
Target Start/End: Complemental strand, 17805949 - 17805817
Alignment:
Q  51 gcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggccta 149  Q
    ||||||||||||||||| |||| |||||| ||||||||||||||||| |||||||||| |||||||||||       || ||| | ||| ||||||||||    
T  17805949 gcttttaaataggccaggccaggccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaaatttttcgtatgccaggctcaggccta 17805850  T
Q  150 tcaaagcatggtctggcctgacctatttccaac 182  Q
    ||||||| ||| |||||||| |||||| |||||    
T  17805849 tcaaagcctggcctggcctggcctattcccaac 17805817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 64 - 187
Target Start/End: Complemental strand, 18353211 - 18353087
Alignment:
Q  64 ccagaccagaccaaaataataggcctatgaaaggc-ataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtc 162  Q
    |||| |||||||||||||||||||||||||||||| ||| ||||| |||||||||||       || ||||| ||| ||||||||||||||||| ||| |    
T  18353211 ccaggccagaccaaaataataggcctatgaaaggccataagccaggctcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctggcc 18353112  T
Q  163 tggcctgacctatttccaactctac 187  Q
    |||||||||||||| ||||| ||||    
T  18353111 tggcctgacctattcccaaccctac 18353087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 6889461 - 6889629
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaaggc-ataggccagactcag 113  Q
    ||||||||||||||||||| |  |||  |||| ||  |||||||||||||| | |||| |||||| ||||||| |||||||||| ||||||||| |||||    
T  6889461 aagtaggcctgtaaataggctttcaggtcaggccagacttttaaataggcctggccaggccaaaaaaataggcttatgaaaggctataggccaggctcag 6889560  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    ||||||       || ||||| ||| ||||||||||||||||| ||| |||||||  |||||| |||||    
T  6889561 gcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctggcctggcctagcctattcccaac 6889629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 60 - 182
Target Start/End: Complemental strand, 24038368 - 24038245
Alignment:
Q  60 taggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcat 158  Q
    |||||||| ||||||||||| ||||||||||||||||| ||||||| || ||||||| |||       || ||||| ||| ||||||||||||||||| |    
T  24038368 taggccaggccagaccaaaaaaataggcctatgaaaggccataggctaggctcaggcttgcaaattttttcgtaggccaggctcaggcctatcaaagcct 24038269  T
Q  159 ggtctggcctgacctatttccaac 182  Q
    || ||| ||||||||||| |||||    
T  24038268 ggcctgacctgacctattcccaac 24038245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 188
Target Start/End: Original strand, 50097031 - 50097168
Alignment:
Q  52 cttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctat 150  Q
    |||||||||||||||| |||| |||||| ||||||||||||||||| |||||||||  ||||| |||||       || ||||| || ||||| ||||||    
T  50097031 cttttaaataggccaggccaggccaaaaaaataggcctatgaaaggccataggccatgctcagacctgcaaattttttcgtaggccaaactcaagcctat 50097130  T
Q  151 caaagcatggtctggcctgacctatttccaactctact 188  Q
    |||| | || ||||||||| |||||| ||||| |||||    
T  50097131 caaaacctgatctggcctggcctattcccaaccctact 50097168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 176
Target Start/End: Complemental strand, 26257564 - 26257400
Alignment:
Q  13 tgaagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaaggc-ataggccagactc 111  Q
    |||||||||||||||| |||| |  ||| ||||  || ||||||||||||| ||||||||||| | | ||  ||||||||| |||| ||||||||| |||    
T  26257564 tgaagtaggcctgtaagtaggctttcagaccagtccaggcttttaaataggtcagaccagacctagaaaaacggcctatgataggccataggccaggctc 26257465  T
Q  112 aggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatt 176  Q
    |||| ||        ||  |||||||||||||||||||||||||| || ||||||||| ||||||    
T  26257464 aggcttgtgatttatttcataggtcagactcaggcctatcaaagcctgatctggcctggcctatt 26257400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 156
Target Start/End: Complemental strand, 13253415 - 13253274
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  |||  || ||||  |||||||||||||||| |||| |||||| || |||||||||||||| |||||| ||| |||||    
T  13253415 aagtaggcctgtaaataggctttcaggtcatgtcagacttttaaataggccaggccaggccaaaa-aaaaggcctatgaaaggccataggtcaggctcag 13253317  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagc 156  Q
    ||||||       || ||||| ||| |||||||||||||||||    
T  13253316 gcctgcaaattttttcgtaggccaggctcaggcctatcaaagc 13253274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 168
Target Start/End: Complemental strand, 44969199 - 44969045
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| ||  |||||||||||| ||| |||| |||||| ||||||||||||||||| ||||| || |  ||||    
T  44969199 aagtaggcctgtaaataggctttcaggccaggccagacttttaaataggtcaggccaggccaaaaaaataggcctatgaaaggccatagaccgggatcag 44969100  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcct 168  Q
    ||||||       || |||||  || ||||||||||||||||| ||| |||||||    
T  44969099 gcctgcaaattttttcgtaggctaggctcaggcctatcaaagcctggcctggcct 44969045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 176
Target Start/End: Complemental strand, 34084096 - 34083979
Alignment:
Q  60 taggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcat 158  Q
    ||||| || ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||       || ||||| ||| ||||||||||||||||  |    
T  34084096 taggctaggccagaacaaaaaaataggcctatgaaaggccataggccagactcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaagtct 34083997  T
Q  159 ggtctggcctgacctatt 176  Q
    || |||| ||| ||||||    
T  34083996 ggcctggtctggcctatt 34083979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 176
Target Start/End: Complemental strand, 19507193 - 19507067
Alignment:
Q  51 gcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggccta 149  Q
    ||||||||||||||||| ||||||| | | ||  ||||||||| ||| |||||| ||| ||||||| ||        || ||||| ||| ||||||||||    
T  19507193 gcttttaaataggccaggccagacctagaaaaacggcctatgataggtcataggtcaggctcaggcttgtaatttatttcgtaggccaggctcaggccta 19507094  T
Q  150 tcaaagcatggtctggcctgacctatt 176  Q
    ||||||| |||||||||||||||||||    
T  19507093 tcaaagcctggtctggcctgacctatt 19507067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 8703847 - 8703931
Alignment:
Q  14 gaagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaaggc 98  Q
    |||||||||||||||||| | | ||| |||||||||  |||||||||||||||| |||| | |||| |||||||  |||||||||    
T  8703847 gaagtaggcctgtaaatatgcttccaatccaggtcagacttttaaataggccaggccaggcaaaaaaaataggcacatgaaaggc 8703931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 156
Target Start/End: Original strand, 7109581 - 7109677
Alignment:
Q  61 aggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagc 156  Q
    |||||||||||| |||||| ||||||| ||||||||| |||||||||  |||||||||||       || ||||| ||| |||||||||||||||||    
T  7109581 aggccagaccaggccaaaaaaataggcttatgaaaggccataggccaagctcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaagc 7109677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 156
Target Start/End: Original strand, 12029317 - 12029412
Alignment:
Q  61 aggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagc 156  Q
    ||||||| ||||||||||| ||||||| ||||||| | |||||||||| ||||||| |||       |||||||||||| |||||||||||||||||    
T  12029317 aggccaggccagaccaaaa-aataggcatatgaaatgtcataggccaggctcaggcttgcaaaaaaatttgtaggtcaggctcaggcctatcaaagc 12029412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 31225536 - 31225619
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaaggc 98  Q
    ||||| || |||||||||| |  ||| ||||| ||| |||||||||||| |||| ||| |||||| ||||||||||||||||||    
T  31225536 aagtatgcttgtaaataggctttcaggccaggccaaacttttaaataggtcagatcaggccaaaaaaataggcctatgaaaggc 31225619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 176
Target Start/End: Original strand, 44779427 - 44779591
Alignment:
Q  13 tgaagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatga-aaggcataggccagactc 111  Q
    |||||||||||| ||| |||| |  ||| ||||  || ||||||||||||| ||||||||||| | | ||  ||||||||| ||| |||||||||| |||    
T  44779427 tgaagtaggcctataagtaggctttcagaccagtccaggcttttaaataggtcagaccagacctagaaaaacggcctatgataagccataggccaggctc 44779526  T
Q  112 aggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatt 176  Q
    |||| ||        ||  |||||||| ||||||||||||||||| ||| |||||||| ||||||    
T  44779527 aggcttgtgatttatttcataggtcaggctcaggcctatcaaagcctggcctggcctggcctatt 44779591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 176
Target Start/End: Complemental strand, 44912733 - 44912607
Alignment:
Q  51 gcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggccta 149  Q
    ||||||||||||| || |||||||| | | ||  ||||||||| ||| |||||||||| ||||||| ||        || ||||||||||||||||||||    
T  44912733 gcttttaaataggtcataccagacctagaaaaacggcctatgataggtcataggccaggctcaggcttgtgatttatttcgtaggtcagactcaggccta 44912634  T
Q  150 tcaaagcatggtctggcctgacctatt 176  Q
    ||||||  ||| ||| |||||||||||    
T  44912633 tcaaagtctggcctgacctgacctatt 44912607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 168
Target Start/End: Complemental strand, 5616550 - 5616512
Alignment:
Q  130 gtaggtcagactcaggcctatcaaagcatggtctggcct 168  Q
    ||||||||||||||||||||||||||| ||| |||||||    
T  5616550 gtaggtcagactcaggcctatcaaagcctggcctggcct 5616512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 156
Target Start/End: Original strand, 6888986 - 6889091
Alignment:
Q  51 gcttttaaataggccagaccagaccaaaataataggcctatgaaaggc-ataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggccta 149  Q
    ||||||||||||||||| |||| | |||| || |||| |||||||||| ||||| ||| |||||||||||       || ||||| ||||||||| ||||    
T  6888986 gcttttaaataggccaggccaggcaaaaaaaa-aggcttatgaaaggccataggtcaggctcaggcctgcaaattttttcgtaggccagactcagaccta 6889084  T
Q  150 tcaaagc 156  Q
    |||||||    
T  6889085 tcaaagc 6889091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 3831642 - 3831590
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccag 67  Q
    ||||||||||||||||||| |  ||| ||||||||  ||||||||||||||||    
T  3831642 aagtaggcctgtaaataggctttcaggccaggtcagacttttaaataggccag 3831590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 187
Target Start/End: Original strand, 81292 - 81465
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| || ||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||| |||||    
T  81292 aagtaggcctgtaaataggctttcaggccaggccaggcttttaaataggccaggccaggccaaaataataggcctatgaaaggccataggccaggctcag 81391  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaactctac 187  Q
    ||||||       || ||||| ||| |||| |||||||||||| ||| |||||||| |||||| ||||| ||||    
T  81392 gcctgcaaattttttcgtaggccaggctcaagcctatcaaagcctggcctggcctggcctattcccaaccctac 81465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 187
Target Start/End: Original strand, 15943071 - 15943244
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| || ||||||||||||||||| |||| |||||| ||||||||||||||||| |||||||||| |||||    
T  15943071 aagtaggcctgtaaataggctttcaggccaggccaggcttttaaataggccaggccaggccaaaaaaataggcctatgaaaggccataggccaggctcag 15943170  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaactctac 187  Q
    ||||||       || ||||| ||| ||||||||||||||||| ||| |||||||| |||||| ||||| ||||    
T  15943171 gcctgcaaaaaatttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaaccctac 15943244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 188
Target Start/End: Complemental strand, 11410693 - 11410519
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| ||  |||||||||||| ||| |||| |||||||||||||||||||||||| |||||||||| |||||    
T  11410693 aagtaggcctgtaaataggctttcaggccaggccagacttttaaataggtcaggccaggccaaaataataggcctatgaaaggccataggccaggctcag 11410594  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaactctact 188  Q
    ||||||       || ||||| ||| ||||||||||||||||| ||| |||||||| |||||| ||||| |||||    
T  11410593 gcctgcaaaaattttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaaccctact 11410519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 2732462 - 2732294
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||  || ||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||| |||||    
T  2732462 aagtaggcctgtaaataggctttcaggccagaccaggcttttaaataggccaggccaggccaaaataataggcctatgaaaggccataggccaggctcag 2732363  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    |||||        || ||||| ||| ||||||||||||||||| ||| |||||||| |||||| |||||    
T  2732362 gcctgtaaattttttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaac 2732294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 1411474 - 1411642
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaag-gcataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| ||  ||||||||||| ||||||||| |||||| ||||||||||||||||  |||||||||| |||||    
T  1411474 aagtaggcctgtaaataggctttcaggccaggccagacttttaaatagaccagaccaggccaaaaaaataggcctatgaaagaccataggccaggctcag 1411573  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    ||||||       || ||||| ||  ||||||||||||||||| ||| |||||||| |||||| |||||    
T  1411574 gcctgcaaaatttttcgtaggccaagctcaggcctatcaaagcctggcctggcctggcctattcccaac 1411642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 51 - 182
Target Start/End: Original strand, 34521232 - 34521364
Alignment:
Q  51 gcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggccta 149  Q
    ||||||||||||| ||| |||| |||||||||||||||||||||||| |||||||||| |||||||||||       || ||||||||| ||||||||||    
T  34521232 gcttttaaataggtcaggccaggccaaaataataggcctatgaaaggccataggccaggctcaggcctgcaaattttttcgtaggtcaggctcaggccta 34521331  T
Q  150 tcaaagcatggtctggcctgacctatttccaac 182  Q
    ||||||| ||| ||| |||| |||||| |||||    
T  34521332 tcaaagcctggcctgacctggcctattcccaac 34521364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 182
Target Start/End: Original strand, 14776181 - 14776303
Alignment:
Q  61 aggccagaccagaccaaaataataggcctatgaaaggc-ataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatg 159  Q
    ||||||| |||| |||||| |||||||||||||||||| ||||||||| |||||||||||       || ||||| ||| ||||||||||||||||| ||    
T  14776181 aggccaggccaggccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctg 14776280  T
Q  160 gtctggcctgacctatttccaac 182  Q
    | |||||||| |||||| |||||    
T  14776281 gcctggcctggcctattcccaac 14776303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 48214231 - 48214130
Alignment:
Q  19 aggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcct 117  Q
    ||||||||||||||| |  ||| ||||| ||  |||||||||||||||| |||| |||||| ||||||||||||||||| |||||||||| |||||||||    
T  48214231 aggcctgtaaataggatttcaggccagggcagacttttaaataggccaggccaggccaaaaaaataggcctatgaaaggccataggccaggctcaggcct 48214132  T
Q  118 gc 119  Q
    ||    
T  48214131 gc 48214130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 37807130 - 37807027
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||  ||   ||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||| |||||    
T  37807130 aagtaggcctgtaaataggctttcaggccagaccagatttttaaataggtcagaccagaccaaaaaaataggcctatgaaaggccataggccaggctcag 37807031  T
Q  114 gcct 117  Q
    ||||    
T  37807030 gcct 37807027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 61 - 182
Target Start/End: Complemental strand, 3357086 - 3356964
Alignment:
Q  61 aggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatg 159  Q
    ||||||| |||| |||||| ||||||||||||||||| |||||||||| ||||||||| |       || ||||| ||| ||||||||||||||||| ||    
T  3357086 aggccaggccaggccaaaaaaataggcctatgaaaggccataggccaggctcaggccttcaaattttttcgtaggccaggctcaggcctatcaaagcctg 3356987  T
Q  160 gtctggcctgacctatttccaac 182  Q
    | |||||||| |||||| |||||    
T  3356986 gcctggcctggcctattcccaac 3356964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 168
Target Start/End: Original strand, 18533317 - 18533470
Alignment:
Q  16 agtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcagg 114  Q
    ||||| |||||||||||| |  ||| ||||  || ||||||||||||| |||||||  |||||| ||||||||||||||||| ||||||| || ||||||    
T  18533317 agtagacctgtaaataggctttcaggccagaccatgcttttaaataggtcagaccaagccaaaaaaataggcctatgaaaggtcataggctaggctcagg 18533416  T
Q  115 cctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcct 168  Q
     ||||       || ||||| ||| ||||||||||||||||| ||| |||||||    
T  18533417 tctgcaaattttttcgtaggccaggctcaggcctatcaaagcctggcctggcct 18533470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 155
Target Start/End: Complemental strand, 31673710 - 31673569
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    |||||||||||||||||||||  ||| ||||| ||  ||||||||||||||||  ||||| |||| ||||||||||||||||| ||||||| |  ||||     
T  31673710 aagtaggcctgtaaataggttttcaggccaggccagacttttaaataggccaggtcagacaaaaaaaataggcctatgaaaggtcataggctaagctcaa 31673611  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaag 155  Q
    |||||        || ||||||||| ||||||||||||||||    
T  31673610 gcctgtaaattttttcgtaggtcaggctcaggcctatcaaag 31673569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 41892295 - 41892127
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||| ||||||| |  ||| ||||| ||  |||||||||||||||| |||| | |||| || |||||||||||||| |||||||||| |||||    
T  41892295 aagtaggcctgcaaataggctttcaggccaggccagacttttaaataggccaggccaggcaaaaaaaaaaggcctatgaaaggccataggccaggctcag 41892196  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    || |||       || ||| | ||| ||||||||||||||||  ||| |||||||| |||||| |||||    
T  41892195 gcttgcaaattttttcgtaagccaggctcaggcctatcaaagtctggcctggcctggcctattcccaac 41892127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 176
Target Start/End: Complemental strand, 21806674 - 21806510
Alignment:
Q  13 tgaagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaaggc-ataggccagactc 111  Q
    |||||||||| ||||| |||| |  ||| ||||  || ||||||||||||||||| |||| || | | ||  ||||||||| |||| |||||||||||||    
T  21806674 tgaagtaggcatgtaagtaggctttcaggccagtccaggcttttaaataggccaggccaggcctagaaaaacggcctatgataggccataggccagactc 21806575  T
Q  112 aggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatt 176  Q
    | || ||        || ||||| ||| ||||||||||||||||| |||||||||||| ||||||    
T  21806574 aagcttgtgatttatttcgtaggccaggctcaggcctatcaaagcctggtctggcctggcctatt 21806510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 24421891 - 24421949
Alignment:
Q  54 tttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactca 112  Q
    |||||||||||||||||||||||||| |||||||| |||||||| |||||||||| ||||    
T  24421891 tttaaataggccagaccagaccaaaa-aataggcccatgaaaggccataggccaggctca 24421949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 186
Target Start/End: Original strand, 12419104 - 12419277
Alignment:
Q  13 tgaagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaaggc-ataggccagactc 111  Q
    ||||||||||||| || |||| |  ||| ||||  || ||||||||||||||||| |||| || | | || |||||||||| |||| ||||||||| |||    
T  12419104 tgaagtaggcctgcaagtaggctttcaggccagtccaggcttttaaataggccaggccaggcctagaaaa-aggcctatgataggccataggccaggctc 12419202  T
Q  112 aggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaactcta 186  Q
    |||| ||        || ||||| ||| ||||||||||||||||| ||| |||||||| |||||| ||| |||||    
T  12419203 aggcttgtgatttatttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccacctcta 12419277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 182
Target Start/End: Original strand, 41399709 - 41399830
Alignment:
Q  61 aggccagaccagaccaaaataataggcctatgaaag-gcataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatg 159  Q
    ||||||| |||| |||||| ||||||||||||||||  |||||||||| || ||||||||       || ||||| ||| |||||||||||||||||  |    
T  41399709 aggccaggccaggccaaaaaaataggcctatgaaagaccataggccaggcttaggcctgcaaaatttttcgtaggccaggctcaggcctatcaaagc-cg 41399807  T
Q  160 gtctggcctgacctatttccaac 182  Q
    | |||||||| |||||| |||||    
T  41399808 gcctggcctggcctattcccaac 41399830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 2196100 - 2196048
Alignment:
Q  130 gtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    ||||| |||| |||||||||||||||  ||||||||||||||||||| |||||    
T  2196100 gtaggccagattcaggcctatcaaagtctggtctggcctgacctattcccaac 2196048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 169
Target Start/End: Original strand, 46191736 - 46191775
Alignment:
Q  130 gtaggtcagactcaggcctatcaaagcatggtctggcctg 169  Q
    ||||||||||||||||||||||||||| ||||||| ||||    
T  46191736 gtaggtcagactcaggcctatcaaagcctggtctgacctg 46191775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 4067989 - 4067943
Alignment:
Q  52 cttttaaataggccagaccagaccaaaataataggcctatgaaaggc 98  Q
    |||||||||||||||  ||| |||||||||||||| |||||||||||    
T  4067989 cttttaaataggccaagccataccaaaataataggtctatgaaaggc 4067943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 36820945 - 36820987
Alignment:
Q  140 ctcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    ||||||||||||||||| |||||||||||| |||||| |||||    
T  36820945 ctcaggcctatcaaagcctggtctggcctggcctattcccaac 36820987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 2941194 - 2941243
Alignment:
Q  127 tttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatt 176  Q
    |||||||||||| ||||||||||||||||  ||| |||||||| ||||||    
T  2941194 tttgtaggtcaggctcaggcctatcaaagtctggcctggcctggcctatt 2941243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 13391113 - 13391064
Alignment:
Q  127 tttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatt 176  Q
    |||||||| ||| ||||||||||||||||| ||| |||||||| ||||||    
T  13391113 tttgtaggccaggctcaggcctatcaaagcctggcctggcctggcctatt 13391064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 187
Target Start/End: Original strand, 38308025 - 38308198
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| ||  |||||||||||||||| |||| |||||||||||||||||||||||| |||||||||| |||||    
T  38308025 aagtaggcctgtaaataggctttcaggccaggccagacttttaaataggccaggccaggccaaaataataggcctatgaaaggccataggccaggctcag 38308124  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaactctac 187  Q
    ||||||       || ||||| ||| ||||||||||||||||| ||| |||||||| |||||| ||||| ||||    
T  38308125 gcctgcaaaatttttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaaccctac 38308198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 40730390 - 40730558
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| |||||  | ||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||| |||||    
T  40730390 aagtaggcctgtaaataggctttcaggccaggctaggcttttaaataggccaggccaggccaaaataataggcctatgaaaggccataggccaggctcag 40730489  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    ||||||       || ||||| ||| ||||||||||||||||| ||| |||||||| |||||| |||||    
T  40730490 gcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaac 40730558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 168
Target Start/End: Complemental strand, 47691750 - 47691596
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| || ||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||| |||||    
T  47691750 aagtaggcctgtaaataggctttcaggccaggccaggcttttaaataggccaggccaggccaaaataataggcctatgaaaggccataggccaggctcag 47691651  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcct 168  Q
    ||||||       || ||||| ||| ||||||||||||||||  ||| |||||||    
T  47691650 gcctgcaaattttttcgtaggccaggctcaggcctatcaaagtctggcctggcct 47691596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 10010820 - 10010988
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaag-gcataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| || ||||||||||||| ||| |||| |||||||||||||||||||||||  |||||||||| |||||    
T  10010820 aagtaggcctgtaaataggctttcaggccaggccaggcttttaaataggtcaggccaggccaaaataataggcctatgaaagaccataggccaggctcag 10010919  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    ||||||       || ||||| ||| ||||||||||||||||| ||| ||| |||| |||||| |||||    
T  10010920 gcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctggcctgacctggcctattcccaac 10010988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 10017961 - 10018129
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaag-gcataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| || ||||||||||||| ||| |||| |||||||||||||||||||||||  |||||||||| |||||    
T  10017961 aagtaggcctgtaaataggctttcaggccaggccaggcttttaaataggtcaggccaggccaaaataataggcctatgaaagaccataggccaggctcag 10018060  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    ||||||       || ||||| ||| ||||||||||||||||| ||| ||| |||| |||||| |||||    
T  10018061 gcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctggcctgacctggcctattcccaac 10018129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 16711915 - 16711747
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    |||||||||||||||||||||  |||  |||| ||  |||||||||||||||| |||| |||||| ||||||||| ||||||| |||||||||| |||||    
T  16711915 aagtaggcctgtaaataggttttcaggtcaggccagacttttaaataggccaggccaggccaaaagaataggcctgtgaaaggccataggccaggctcag 16711816  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    ||||||       || ||||| ||||||||| ||||||||||| | |  ||||||||||||||||||||    
T  16711815 gcctgcaaattttttcgtaggccagactcagacctatcaaagcctagcttggcctgacctatttccaac 16711747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 52 - 168
Target Start/End: Original strand, 41324403 - 41324519
Alignment:
Q  52 cttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctat 150  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||       || ||||| |||||||||||||||    
T  41324403 cttttaaataggccagaccagaccaaaaaaataggcctatgaaaggccataggccagactcaggcctgc-aaatttttcgtaggccagactcaggcctat 41324501  T
Q  151 caaagcatggtctggcct 168  Q
    |||||| ||| |||||||    
T  41324502 caaagcctggcctggcct 41324519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 48826172 - 48826004
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    |||||||||| |||||||| |  ||| |||||  |  |||||||||||||||| |||| |||||||||||||||||||||||| |||||||||| |||||    
T  48826172 aagtaggcctataaataggctttcaggccaggctagacttttaaataggccaggccaggccaaaataataggcctatgaaaggccataggccaggctcag 48826073  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    ||||||       || ||||| ||| ||||||||||||||||| ||| |||||||| |||||| |||||    
T  48826072 gcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaac 48826004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 169
Target Start/End: Complemental strand, 38973754 - 38973599
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| || |||||||||||||||||  ||| |||||| ||||||||||||||||| |||||||||| |||||    
T  38973754 aagtaggcctgtaaataggctttcaggccaggccaggcttttaaataggccaggtcaggccaaaaaaataggcctatgaaaggccataggccaggctcag 38973655  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctg 169  Q
    ||||||       || ||||  ||| ||||||||||||||||||||| ||||||||    
T  38973654 gcctgcaaattttttcgtagtccaggctcaggcctatcaaagcatggcctggcctg 38973599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 52 - 188
Target Start/End: Complemental strand, 9627621 - 9627484
Alignment:
Q  52 cttttaaataggccagaccagaccaaaataataggcctatgaaaggc-ataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctat 150  Q
    ||||||||||||| ||  ||| |||||| |||||||||||||||||| ||||| |||||||||||||||       |||||||| ||| |||||||||||    
T  9627621 cttttaaataggctagggcaggccaaaaaaataggcctatgaaaggccataggtcagactcaggcctgcaaattcttttgtaggccaggctcaggcctat 9627522  T
Q  151 caaagcatggtctggcctgacctatttccaactctact 188  Q
    |||||| ||| ||| |||| |||||||||||| |||||    
T  9627521 caaagcctggcctgacctggcctatttccaaccctact 9627484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 14599148 - 14599049
Alignment:
Q  21 gcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcctgc 119  Q
    ||||||||||||| |  ||| ||||| ||  |||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  14599148 gcctgtaaataggctttcaggccaggccagacttttaaataggccagaccaaaccaaaaaaataggcctatgaaaggccataggccagactcaggcctgc 14599049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 156
Target Start/End: Original strand, 20039607 - 20039749
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  |||  |||| || |||||||||||| |||| |||| |||||| ||||||||||||||||| |||||||||| |||||    
T  20039607 aagtaggcctgtaaataggctttcaggtcagggcatgcttttaaatagaccaggccaggccaaaaaaataggcctatgaaaggccataggccaggctcag 20039706  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagc 156  Q
    ||||||       || ||||| ||| |||||||||||||||||    
T  20039707 gcctgcaaattttttcgtaggccaggctcaggcctatcaaagc 20039749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 52 - 187
Target Start/End: Original strand, 8753776 - 8753912
Alignment:
Q  52 cttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctat 150  Q
    ||||||||||||||||  ||| |||||| ||||||||||||||||| |||||||||| |||||||||||       || ||||| ||| |||| ||||||    
T  8753776 cttttaaataggccaggtcaggccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaattttttcgtaggccaggctcatgcctat 8753875  T
Q  151 caaagcatggtctggcctgacctatttccaactctac 187  Q
    |||||| ||| |||||||| |||||| ||||| ||||    
T  8753876 caaagcctggcctggcctggcctattcccaaccctac 8753912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 168
Target Start/End: Original strand, 48801189 - 48801343
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| |||   ||  |||||||||||| |||||||| |||||| ||||||||||||||||| |||||||||| |||||    
T  48801189 aagtaggcctgtaaataggctttcaggccaaaccagacttttaaataggacagaccaggccaaaaaaataggcctatgaaaggtcataggccaggctcag 48801288  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcct 168  Q
    ||||||       || || || ||| ||||||||||||||||| ||| |||||||    
T  48801289 gcctgcaaattttttcgttggccaggctcaggcctatcaaagcctggcctggcct 48801343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 7363488 - 7363593
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  |||  |||| ||  ||||||| |||||||| ||||| ||||| ||||||||||||||||| |||||||||| |||||    
T  7363488 aagtaggcctgtaaataggctttcaggtcaggccagacttttaagtaggccaggccagatcaaaaaaataggcctatgaaaggccataggccaggctcag 7363587  T
Q  114 gcctgc 119  Q
    ||||||    
T  7363588 gcctgc 7363593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 182
Target Start/End: Original strand, 48089793 - 48089912
Alignment:
Q  64 ccagaccagaccaaaataataggcctatgaaaggc-ataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtc 162  Q
    |||| |||| |||||| |||||||||||||||||| ||| ||||| |||||||||||       || ||||| ||| ||||||||||||||||| ||  |    
T  48089793 ccaggccaggccaaaaaaataggcctatgaaaggccatatgccaggctcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctgacc 48089892  T
Q  163 tggcctgacctatttccaac 182  Q
    ||||||| |||||| |||||    
T  48089893 tggcctggcctattcccaac 48089912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 182
Target Start/End: Original strand, 37010983 - 37011104
Alignment:
Q  61 aggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatg 159  Q
    ||||||| |||| |||||| ||||||||||||||||| |||||||||| |||||||||||       || ||||| ||| ||||||||||||||||  ||    
T  37010983 aggccaggccaggccaaaaaaataggcctatgaaaggccataggccag-ctcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaagtctg 37011081  T
Q  160 gtctggcctgacctatttccaac 182  Q
    | |||||||  |||||| |||||    
T  37011082 gcctggcctagcctattcccaac 37011104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 40412802 - 40412855
Alignment:
Q  65 cagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcct 117  Q
    ||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||    
T  40412802 cagaccagaccaaaaaaataggcctatgaaaggccataggctagactcaggcct 40412855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 161
Target Start/End: Original strand, 23106372 - 23106483
Alignment:
Q  52 cttttaaataggccagaccagaccaaaataa--taggcctatgaaagg-cataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcct 148  Q
    ||||||||||| ||||||||||| |||| ||  ||||||||||||||| |||||||||||||||||| |||       ||  ||||  ||||||||||||    
T  23106372 cttttaaatag-ccagaccagacaaaaaaaaaataggcctatgaaaggccataggccagactcaggcttgcaaattttttcataggctagactcaggcct 23106470  T
Q  149 atcaaagcatggt 161  Q
    |||||||||||||    
T  23106471 atcaaagcatggt 23106483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 168
Target Start/End: Complemental strand, 41487560 - 41487467
Alignment:
Q  76 aaaataataggcctatgaaaggc-ataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcct 168  Q
    |||| |||||||||||||||||| ||||||||| |||||||||||       || ||||| ||| ||||||||||||||||| ||| |||||||    
T  41487560 aaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaaaattttcgtaggccaggctcaggcctatcaaagcctggcctggcct 41487467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 40412844 - 40412895
Alignment:
Q  137 agactcaggcctatcaaagcatggtctggcctgacctatttccaactctact 188  Q
    |||||||||||||||||||| ||| ||||||||||||||| ||||| |||||    
T  40412844 agactcaggcctatcaaagcctggcctggcctgacctattcccaaccctact 40412895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 52225643 - 52225702
Alignment:
Q  61 aggccagaccagaccaaaataataggcctatgaaaggc-ataggccagactcaggcctgc 119  Q
    |||||||||||| | |||| |||||||||||||||||| ||||||||| |||||||||||    
T  52225643 aggccagaccaggcgaaaaaaataggcctatgaaaggctataggccaggctcaggcctgc 52225702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 25040183 - 25040229
Alignment:
Q  52 cttttaaataggccagaccagaccaaaataataggcctatgaaaggc 98  Q
    ||||||||||||||||||||||| |||| || |||||||||||||||    
T  25040183 cttttaaataggccagaccagacaaaaaaaaaaggcctatgaaaggc 25040229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 182
Target Start/End: Original strand, 11845391 - 11845475
Alignment:
Q  98 cataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    |||||||||| |||||||||||       || ||||| ||| ||||||||||||||||| ||| |||||||| |||||| |||||    
T  11845391 cataggccaggctcaggcctgcaaaaattttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaac 11845475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 32212322 - 32212255
Alignment:
Q  51 gcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcct 117  Q
    |||||||||||||  || ||||||||| | ||||||||||||||||| |||||||| | |||||||||    
T  32212322 gcttttaaataggttaggccagaccaagaaaataggcctatgaaaggtcataggcccggctcaggcct 32212255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 169
Target Start/End: Original strand, 46903961 - 46904000
Alignment:
Q  130 gtaggtcagactcaggcctatcaaagcatggtctggcctg 169  Q
    ||||||||| ||||||||||||||||||||| ||||||||    
T  46903961 gtaggtcaggctcaggcctatcaaagcatggcctggcctg 46904000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 168
Target Start/End: Original strand, 45783937 - 45783974
Alignment:
Q  131 taggtcagactcaggcctatcaaagcatggtctggcct 168  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  45783937 taggccagactcaggcctatcaaagcctggtctggcct 45783974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 115
Target Start/End: Complemental strand, 36488910 - 36488842
Alignment:
Q  48 caagcttttaaataggccagaccagaccaaaataataggcctatgaaag-gcataggccagactcaggc 115  Q
    |||||||||||||||||||| ||||||| ||| ||  ||||||||| ||  ||||| ||||||||||||    
T  36488910 caagcttttaaataggccaggccagacctaaaaaaatggcctatgatagaccatagaccagactcaggc 36488842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 41072 - 40904
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| || ||||||||||||||||| |||| |||||| ||||||||||||||||| |||||||||| |||||    
T  41072 aagtaggcctgtaaataggctttcaggccaggccaggcttttaaataggccaggccaggccaaaaaaataggcctatgaaaggccataggccaggctcag 40973  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    ||||||       || ||||| ||| ||||||||||||||||| ||| |||||||| |||||| |||||    
T  40972 gcctgcaaaaaatttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaac 40904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 8e-33; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 40737972 - 40737804
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| || ||||||||||||||||| |||| |||||| ||||||||||||||||| |||||||||| |||||    
T  40737972 aagtaggcctgtaaataggctttcaggccaggccaggcttttaaataggccaggccaggccaaaaaaataggcctatgaaaggccataggccaggctcag 40737873  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    ||||||       || ||||| ||| ||||||||||||||||| ||| |||||||| |||||| |||||    
T  40737872 gcctgcaaaaaatttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaac 40737804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 15 - 187
Target Start/End: Original strand, 21198088 - 21198261
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |   || |||||||| ||||||||||||||||| |||| | |||| ||||||||||||||||| |||||||||| |||||    
T  21198088 aagtaggcctgtaaataggcttttaggccaggtcaggcttttaaataggccaggccaggctaaaaaaataggcctatgaaaggccataggccaggctcag 21198187  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaactctac 187  Q
    ||||||       || ||||| ||| ||||||||||||||||| ||| |||||||| |||||| ||||| ||||    
T  21198188 gcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaaccctac 21198261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 34726277 - 34726445
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  |||  |||| || ||||||||||||| ||| |||| |||||||||||||||||||||||| |||||||||| |||||    
T  34726277 aagtaggcctgtaaataggctttcaggtcaggccaggcttttaaataggtcaggccaggccaaaataataggcctatgaaaggccataggccaggctcag 34726376  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    |||||        || ||||| ||| ||||||||||||||||| ||| |||||||| |||||| |||||    
T  34726377 gcctgtaaaatttttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaac 34726445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 12033777 - 12033950
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||  ||  ||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||| |||||    
T  12033777 aagtaggcctgtaaataggctttcaggccagaccagacttttaaataggccagaccaggccaaaaaaataggcctatgaaaggccataggccaggctcag 12033876  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaactctact 188  Q
    ||||||       |||||||| ||| ||||||||||||||||  ||| |||||||  |||||| ||||| |||||    
T  12033877 gcctgc-aaaatttttgtaggccaggctcaggcctatcaaagtctggcctggcctagcctattcccaaccctact 12033950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 176
Target Start/End: Complemental strand, 29557587 - 29557425
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| ||  |||||||||||||||| |||  |||||| ||||||||||||||||| ||||||| || |||||    
T  29557587 aagtaggcctgtaaataggctttcaggccaggccagacttttaaataggccaggccatgccaaaaaaataggcctatgaaaggccataggctaggctcag 29557488  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatt 176  Q
    ||||||       || ||||| ||| ||||||||||||||||| || ||||||||| ||||||    
T  29557487 gcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctgatctggcctggcctatt 29557425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 61 - 188
Target Start/End: Original strand, 13029104 - 13029232
Alignment:
Q  61 aggccagaccagaccaaaataataggcctatgaaaggc-ataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatg 159  Q
    ||||||| |||| |||||| |||||||||||||||||| ||||||||| |||||||||||       || ||||| ||| ||||||||||||||||| ||    
T  13029104 aggccaggccaggccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctg 13029203  T
Q  160 gtctggcctgacctatttccaactctact 188  Q
    | |||||||| |||||| ||||| |||||    
T  13029204 gcctggcctggcctattcccaaccctact 13029232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 154
Target Start/End: Complemental strand, 38213568 - 38213428
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    |||||| |||||||||||| |  |||  |||| ||  |||||||||||| ||| |||| |||||| ||||||||||||||||| |||||||||| |||||    
T  38213568 aagtagacctgtaaataggctttcaggtcaggccagacttttaaataggtcaggccaggccaaaaaaataggcctatgaaaggccataggccaggctcag 38213469  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaa 154  Q
    ||||||       |||||||| ||| |||||||||||||||    
T  38213468 gcctgcaaatttttttgtaggccaggctcaggcctatcaaa 38213428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 2611451 - 2611350
Alignment:
Q  13 tgaagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactc 111  Q
    |||||||||||||||| |||| |  ||| ||||  || ||||||||||||||||||||||||| ||| ||  ||||||||| ||| ||||||||||||||    
T  2611451 tgaagtaggcctgtaagtaggctttcaggccagtccaggcttttaaataggccagaccagacctaaaaaaacggcctatgataggccataggccagactc 2611352  T
Q  112 ag 113  Q
    ||    
T  2611351 ag 2611350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 182
Target Start/End: Original strand, 17852749 - 17852870
Alignment:
Q  61 aggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatg 159  Q
    |||||||||||| |||||| ||||||||||||||||| ||||| |||  |||||||||||       |||||||| ||||||||||||||||||||  ||    
T  17852749 aggccagaccaggccaaaaaaataggcctatgaaaggccatagaccaagctcaggcctgc-aatttttttgtaggccagactcaggcctatcaaagtctg 17852847  T
Q  160 gtctggcctgacctatttccaac 182  Q
      |||||||| |||||| |||||    
T  17852848 acctggcctggcctattcccaac 17852870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 168
Target Start/End: Original strand, 5936769 - 5936877
Alignment:
Q  61 aggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatg 159  Q
    ||||||| ||||||||||| ||||||||||||||||| |||||||||| ||||||||| |       || ||||| ||| ||| ||||||||||||| ||    
T  5936769 aggccaggccagaccaaaaaaataggcctatgaaaggccataggccaggctcaggcctacaaattttttcgtaggccaggctcgggcctatcaaagcctg 5936868  T
Q  160 gtctggcct 168  Q
    | |||||||    
T  5936869 gcctggcct 5936877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 176
Target Start/End: Complemental strand, 6431690 - 6431526
Alignment:
Q  13 tgaagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactc 111  Q
    |||||||| ||||||| |||| |  ||| ||||  || ||||||||||||||||| ||||||| | | ||  ||||||||| ||| ||||||||||||||    
T  6431690 tgaagtagacctgtaagtaggctttcaggccagtccaggcttttaaataggccaggccagacctagaaaaacggcctatgataggccataggccagactc 6431591  T
Q  112 aggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatt 176  Q
    |||| ||        || ||||| ||| ||||||||||||||||| ||| ||| |||||||||||    
T  6431590 aggcttgtgatttatttcgtaggccaggctcaggcctatcaaagcctggcctgacctgacctatt 6431526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 176
Target Start/End: Original strand, 32084116 - 32084228
Alignment:
Q  65 cagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtct 163  Q
    |||||||| |||||| ||||||||||||||||| |||||| ||| |||||||||||       || ||||| ||||||||||||||||||||  ||  ||    
T  32084116 cagaccaggccaaaaaaataggcctatgaaaggccataggtcaggctcaggcctgcaaattttttcgtaggccagactcaggcctatcaaagtctgccct 32084215  T
Q  164 ggcctgacctatt 176  Q
    |||||| ||||||    
T  32084216 ggcctggcctatt 32084228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 18075733 - 18075838
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| ||  |||||||||||| ||| |||| |||||| |||||| |||||||||| |||||||||  ||||     
T  18075733 aagtaggcctgtaaataggctttcaggccaggccagacttttaaataggtcaggccaggccaaaaaaataggtctatgaaaggccataggccaagctcaa 18075832  T
Q  114 gcctgc 119  Q
    ||||||    
T  18075833 gcctgc 18075838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 39133363 - 39133295
Alignment:
Q  52 cttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcctgc 119  Q
    ||||||| |||||||||||||||||| | ||||||||||||||||| ||||| |||| |||| ||||||    
T  39133363 cttttaagtaggccagaccagaccaacaaaataggcctatgaaaggccatagaccaggctcaagcctgc 39133295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 182
Target Start/End: Original strand, 36985416 - 36985500
Alignment:
Q  98 cataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    |||||||||| |||||||||||       || ||||| ||| ||||||||||||||||| |||||||||||| |||||| |||||    
T  36985416 cataggccaggctcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctggtctggcctggcctattcccaac 36985500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 119
Target Start/End: Original strand, 7592532 - 7592600
Alignment:
Q  52 cttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcctgc 119  Q
    |||||||||||| |||  ||||| |||| ||||||||||||||||| |||||||||  |||||||||||    
T  7592532 cttttaaataggtcaggtcagacaaaaaaaataggcctatgaaaggccataggccatgctcaggcctgc 7592600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 155
Target Start/End: Complemental strand, 43616411 - 43616336
Alignment:
Q  81 aataggcctatgaaaggc-ataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaag 155  Q
    |||||||||||||||||| ||| |||||||||||||||||       || ||||| ||| ||||||||||||||||    
T  43616411 aataggcctatgaaaggccataagccagactcaggcctgcaaaatttttcgtaggccaggctcaggcctatcaaag 43616336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 36983261 - 36983298
Alignment:
Q  61 aggccagaccagaccaaaataataggcctatgaaaggc 98  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  36983261 aggccaggccaggccaaaataataggcctatgaaaggc 36983298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 4049393 - 4049561
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| ||  ||||||||||||||||| ||| |||||| |||||| |||||||||| |||||||||| |||||    
T  4049393 aagtaggcctgtaaataggctttcaggccaggccagacttttaaataggccagatcaggccaaaaaaataggtctatgaaaggtcataggccaggctcag 4049492  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    ||||||       || |||||||| |||||| ||||||||||  ||| ||||||||||||||| |||||    
T  4049493 gcctgcaaattttttcgtaggtcaaactcagacctatcaaagtgtggcctggcctgacctattcccaac 4049561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 42062258 - 42062426
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| || ||||||||||||| ||| |||| |||||| ||||||| ||||||||| |||||||||| |||||    
T  42062258 aagtaggcctgtaaataggctttcaggccaggccaggcttttaaataggtcaggccaggccaaaaaaataggcttatgaaaggccataggccaggctcag 42062357  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    ||||||       || ||||| ||| ||||||||||||||||| ||| |||||||| |||||| |||||    
T  42062358 gcctgcaaaaaatttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaac 42062426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 189
Target Start/End: Original strand, 31271385 - 31271560
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  ||| ||||| ||  ||||||||||||| || |||| |||||| ||||||||||||||||| |||||||||| |||||    
T  31271385 aagtaggcctgtaaataggctttcaggccaggccagacttttaaataggctaggccagtccaaaaaaataggcctatgaaaggccataggccaggctcag 31271484  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaactctactg 189  Q
    |||| |       || ||||| ||| || |||||||||||||| ||| |||||||| |||||| ||||| ||||||    
T  31271485 gcctacaaattttttcgtaggccaggcttaggcctatcaaagcctggcctggcctggcctattcccaaccctactg 31271560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 43 - 182
Target Start/End: Original strand, 6644137 - 6644277
Alignment:
Q  43 caggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcctgcnnnnnnntttgtaggtcagact 141  Q
    ||||||| ||||||||||||| ||| |||| |||||| ||||||||||||||||| |||||||||| |||||||||||       || ||||| ||| ||    
T  6644137 caggtcaggcttttaaataggtcaggccaggccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaattttttcgtaggccaggct 6644236  T
Q  142 caggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    ||||||||| ||||| |||||||| ||| |||||| |||||    
T  6644237 caggcctattaaagcctggtctggtctggcctattcccaac 6644277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 4101351 - 4101181
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataa--taggcctatgaaaggc-ataggccagactc 111  Q
    |||||||| |||||||||| |  ||| ||||| || |||||||||||||| ||||||  |||||| ||  |||||||||||||||| ||||| ||| |||    
T  4101351 aagtaggcttgtaaataggctttcaggccaggccaggcttttaaataggctagaccaatccaaaaaaaaataggcctatgaaaggccataggtcaggctc 4101252  T
Q  112 aggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    ||||||||       || ||||||||||||||||||||||||||| ||| ||| |||| |||||| |||||    
T  4101251 aggcctgcaaaatttttcgtaggtcagactcaggcctatcaaagcctggcctgacctggcctattcccaac 4101181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 179
Target Start/End: Complemental strand, 12880585 - 12880466
Alignment:
Q  61 aggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatg 159  Q
    ||||||| ||||||||||| ||||||||||||||||| |||||||||| |||||||||||       || ||||| ||| ||||||||||||||||| ||    
T  12880585 aggccaggccagaccaaaaaaataggcctatgaaaggtcataggccaggctcaggcctgcaaattttttcgtaggccaggctcaggcctatcaaagcctg 12880486  T
Q  160 gtctggcctgacctatttcc 179  Q
    | |||||||| |||||||||    
T  12880485 gcctggcctggcctatttcc 12880466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 182
Target Start/End: Complemental strand, 9163554 - 9163432
Alignment:
Q  61 aggccagaccagaccaaaataataggcctatgaaaggc-ataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatg 159  Q
    ||||||| |||| |||||| |||||||||||||||||| ||||||||| |||||||||||       || ||||| ||| ||||||||||||||||| ||    
T  9163554 aggccaggccaggccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaaaattttcgtaggccaggctcaggcctatcaaagcctg 9163455  T
Q  160 gtctggcctgacctatttccaac 182  Q
    | |||||||| |||||| |||||    
T  9163454 gcctggcctggcctattcccaac 9163432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 156
Target Start/End: Complemental strand, 7035288 - 7035192
Alignment:
Q  61 aggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagc 156  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||       || ||||| ||||||||| |||||||||||    
T  7035288 aggccagaccagaccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaattttttcgtaggccagactcagacctatcaaagc 7035192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 189
Target Start/End: Complemental strand, 7079116 - 7078987
Alignment:
Q  61 aggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatg 159  Q
    |||||||||||| |||||| ||||||||||||||||| |||||||||| |||||||||||       || ||||| ||| |||| |||||||||||| ||    
T  7079116 aggccagaccaggccaaaaaaataggcctatgaaaggccataggccaggctcaggcctgcaaattttttcgtaggccaggctcaagcctatcaaagcctg 7079017  T
Q  160 gtctggcctgacctatttccaactctactg 189  Q
    | ||| |||| || ||| ||||| ||||||    
T  7079016 gcctgacctggcccattcccaaccctactg 7078987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 18158552 - 18158382
Alignment:
Q  13 tgaagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaaggc-ataggccagactc 111  Q
    |||||||||||||||| |||| |  ||| ||||  || ||||||||||||||||| |||| || | | ||  ||||||||| |||| ||||||||| |||    
T  18158552 tgaagtaggcctgtaagtaggctttcaggccagtccaggcttttaaataggccaggccaggcctagaaaaacggcctatgataggccataggccaggctc 18158453  T
Q  112 aggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    |||| ||        || ||||| ||| ||||||||||||||||| ||| ||||||||||||||| |||||    
T  18158452 aggcttgtgatttatttcgtaggccaggctcaggcctatcaaagcctggcctggcctgacctattcccaac 18158382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 165
Target Start/End: Original strand, 42288459 - 42288605
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaaggc-ataggccagactcag 113  Q
    |||||||||||||||||||||  ||| ||||  ||  ||||||||||||| || |||     ||| |||||| ||||||||||| ||||||||| |||||    
T  42288459 aagtaggcctgtaaataggttttcagaccagaccagacttttaaataggcgaggcca-----aaaaaataggtctatgaaaggccataggccaggctcag 42288553  T
Q  114 gcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctgg 165  Q
    ||||||       || ||||| ||||||||||||||||||||| ||| ||||    
T  42288554 gcctgcaatttttttcgtaggccagactcaggcctatcaaagcctggcctgg 42288605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 14084468 - 14084514
Alignment:
Q  52 cttttaaataggccagaccagaccaaaataataggcctatgaaaggc 98  Q
    |||||||||||||||  ||||||||||| ||||||||||||||||||    
T  14084468 cttttaaataggccatgccagaccaaaaaaataggcctatgaaaggc 14084514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 491401 - 491344
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccag 72  Q
    ||||||||||||||||||| |  ||| |||||||| ||||||||||||||||| ||||    
T  491401 aagtaggcctgtaaataggctttcaggccaggtcaggcttttaaataggccaggccag 491344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 11877518 - 11877466
Alignment:
Q  130 gtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    ||||| ||| ||||||||||||||||| ||| ||||||||||||||| |||||    
T  11877518 gtaggccaggctcaggcctatcaaagcctggcctggcctgacctattcccaac 11877466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 32253248 - 32253328
Alignment:
Q  13 tgaagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatga 93  Q
    |||||||| | ||||||||||||  || || ||| ||  ||||||| ||||| |||||||||||||| |||||||||||||    
T  32253248 tgaagtagacttgtaaataggttttcaatctaggccacacttttaattaggctagaccagaccaaaaaaataggcctatga 32253328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 188
Target Start/End: Complemental strand, 40084157 - 40083981
Alignment:
Q  13 tgaagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaaggc-ataggccagactc 111  Q
    |||||||||||||||| |||| |  ||| |||   || |||||||||||| |||| |||| || | | ||  ||||||||| |||| ||||||||| |||    
T  40084157 tgaagtaggcctgtaagtaggctttcaggccaatccaggcttttaaatagaccaggccaggcctagaaaaacggcctatgataggccataggccaggctc 40084058  T
Q  112 aggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaactctact 188  Q
    |||| ||        || ||||| ||| ||||||||||||||||| ||| |||||||| |||||| ||||| |||||    
T  40084057 aggcttgtgatttatttcgtaggccaggctcaggcctatcaaagcctggcctggcctggcctattcccaaccctact 40083981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 176
Target Start/End: Complemental strand, 31624168 - 31624132
Alignment:
Q  140 ctcaggcctatcaaagcatggtctggcctgacctatt 176  Q
    ||||||||||||||||| || ||||||||||||||||    
T  31624168 ctcaggcctatcaaagcctgatctggcctgacctatt 31624132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 218230 - 218329
Alignment:
Q  21 gcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcctgc 119  Q
    ||||||||||||| |  ||| ||||| ||  |||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  218230 gcctgtaaataggctttcaggccaggccagacttttaaataggccagaccaaaccaaaaaaataggcctatgaaaggccataggccagactcaggcctgc 218329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 53 - 182
Target Start/End: Original strand, 14329 - 14459
Alignment:
Q  53 ttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcaggcctgcnnnnnnntttgtaggtcagactcaggcctatc 151  Q
    ||||||||||||||| |||| |||||| ||||||||||||||||| |||||| ||| |||||||||||       || ||||| ||||||||||||||||    
T  14329 ttttaaataggccaggccaggccaaaaaaataggcctatgaaaggacatagggcaggctcaggcctgcaaaaattttcgtaggccagactcaggcctatc 14428  T
Q  152 aaagcatggtctggcctgacctatttccaac 182  Q
    ||||| ||| ||| |||| |||||| |||||    
T  14429 aaagcctggcctgacctggcctattcccaac 14459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 40147 - 39978
Alignment:
Q  15 aagtaggcctgtaaatagg-ttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactca 112  Q
    ||||||||||||||||||| ||  ||| ||||| || ||||||||||||| ||| |||  |||||| ||||||||||||||||| |||||||||| ||||    
T  40147 aagtaggcctgtaaataggcttttcaggccaggccaggcttttaaataggtcaggccatgccaaaaaaataggcctatgaaaggccataggccaggctca 40048  T
Q  113 ggcctgcnnnnnnntttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatttccaac 182  Q
    |||||||       || ||||| ||| |||| |||||||||||| ||  |||| ||| |||||| |||||    
T  40047 ggcctgcaatttttttcgtaggccaggctcaagcctatcaaagcctgacctggtctggcctattcccaac 39978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 24949 - 24848
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg-cataggccagactcag 113  Q
    ||||||||||||||||||| |  |||  |||  || ||||||||||||||||||| || |||||| |||||| |||||||||| |||||||||| |||||    
T  24949 aagtaggcctgtaaataggctttcaggtcagaccaggcttttaaataggccagactaggccaaaaaaataggtctatgaaaggccataggccaggctcag 24850  T
Q  114 gc 115  Q
    ||    
T  24849 gc 24848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 15739 - 15632
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagacc--aaaataataggcctatgaaagg-cataggccagactc 111  Q
    ||||||||||||||||||| |  ||| ||||| || ||||||||||||||||| |||  ||  |||| ||||||||||||||||| |||||||||| |||    
T  15739 aagtaggcctgtaaataggctttcaggccaggccaggcttttaaataggccaggccaagccaaaaaaaaataggcctatgaaaggccataggccaggctc 15640  T
Q  112 aggcctgc 119  Q
    || |||||    
T  15639 agccctgc 15632  T

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Target: scaffold0163 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 35946 - 35864
Alignment:
Q  15 aagtaggcctgtaaataggttgccagtccaggtcaagcttttaaataggccagaccagaccaaaataataggcctatgaaagg 97  Q
    |||||||| |||||||||| |  ||| || || |||| ||||||| |||||| ||||| |||||| |||||||||||||||||    
T  35946 aagtaggcttgtaaataggctttcagacccggccaagtttttaaacaggccataccaggccaaaaaaataggcctatgaaagg 35864  T

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Target: scaffold0275 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 9210 - 9161
Alignment:
Q  127 tttgtaggtcagactcaggcctatcaaagcatggtctggcctgacctatt 176  Q
    |||||||| ||| ||||||||||||||||| |||||||||||| ||||||    
T  9210 tttgtaggccaggctcaggcctatcaaagcctggtctggcctggcctatt 9161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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