View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16011_low_24 (Length: 256)
Name: NF16011_low_24
Description: NF16011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16011_low_24 |
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| [»] scaffold0649 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 240
Target Start/End: Complemental strand, 20967491 - 20967264
Alignment:
| Q |
13 |
aagcatagggaatctttgaataattctccaaaatttatcacccagagtgaaaactctgacttctacagaactgaatgccaccaccttatattttccggtt |
112 |
Q |
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| T |
20967491 |
aagcagagggaatctttgaataattctccaaaatttatcacccagagtgaaaactctgacttctacagaactgaatgccaccaccttatattttccggtt |
20967392 |
T |
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| Q |
113 |
gtattatcgcaaccaaatgaaaatctgaaatagtcataccggtccataaaagtattggtaaaacagccgactatttttgacactgacctcgtggctgggt |
212 |
Q |
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| T |
20967391 |
gtattatcgcaaccaaatgaaaatctgaaatagtcataccggtccataaaagtattggtaaaacagccgactatttttgacactgacctcgtggctgggt |
20967292 |
T |
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| Q |
213 |
tccagaaacggagatggaagttttgaac |
240 |
Q |
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| T |
20967291 |
tccagaaacggagatggaagttttgaac |
20967264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 12 - 240
Target Start/End: Complemental strand, 20980315 - 20980087
Alignment:
| Q |
12 |
gaagcatagggaatctttgaataattctccaaaatttatcacccagagtgaaaactctgacttctacagaactgaatgccaccaccttatattttccggt |
111 |
Q |
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| T |
20980315 |
gaagcagagggaatctttgaataattctccaaaatttatcaccaagagtgaaaactctcacctcgacggaactgaatgccaccaccttatattttccggt |
20980216 |
T |
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| Q |
112 |
tgtattatcgcaaccaaatgaaaatctgaaatagtcataccggtccataaaagtattggtaaaacagccgactatttttgacactgacctcgtggctggg |
211 |
Q |
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| T |
20980215 |
tgtattatcgtagccaaatgaaaatctgaaatagtcatgctggtccataaacgcattgctaacacagccgactattttcgacactgacctcgttgctggg |
20980116 |
T |
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| Q |
212 |
ttccagaaacggagatggaagttttgaac |
240 |
Q |
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| T |
20980115 |
ttccaaaaacggagatgaaagttttgaac |
20980087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0649
Description:
Target: scaffold0649; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 4981 - 4933
Alignment:
| Q |
177 |
agccgactatttttgacactgacctcgtggctgggttccagaaacggag |
225 |
Q |
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| T |
4981 |
agccgagtcttttcgatactgacctcgtggccgggttccagaaacggag |
4933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 5069 - 5013
Alignment:
| Q |
89 |
gccaccaccttatattttccggttgtattatcgcaaccaaatgaaaatctgaaatag |
145 |
Q |
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| T |
5069 |
gccacaaccttatattttccggttgtgttatcataaccaaacgaaaattttaaatag |
5013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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