View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16011_low_25 (Length: 253)

Name: NF16011_low_25
Description: NF16011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16011_low_25
NF16011_low_25
[»] chr2 (3 HSPs)
chr2 (6-247)||(5188716-5188958)
chr2 (6-84)||(40606911-40606989)
chr2 (6-89)||(24127946-24128029)
[»] chr3 (9 HSPs)
chr3 (6-106)||(54718333-54718433)
chr3 (162-247)||(54718499-54718585)
chr3 (7-89)||(33461231-33461313)
chr3 (7-89)||(33573585-33573667)
chr3 (6-89)||(35585365-35585448)
chr3 (6-58)||(11433731-11433783)
chr3 (6-45)||(5834723-5834762)
chr3 (6-103)||(6876531-6876628)
chr3 (6-89)||(32319302-32319386)
[»] chr8 (3 HSPs)
chr8 (6-106)||(3810692-3810793)
chr8 (6-106)||(33473857-33473958)
chr8 (19-105)||(31030375-31030462)
[»] chr4 (4 HSPs)
chr4 (12-106)||(44255712-44255806)
chr4 (6-89)||(44253884-44253967)
chr4 (6-106)||(14272914-14273013)
chr4 (6-84)||(54734625-54734703)
[»] chr1 (5 HSPs)
chr1 (6-106)||(32055172-32055272)
chr1 (162-247)||(32054982-32055068)
chr1 (6-106)||(40371706-40371807)
chr1 (163-223)||(9396788-9396847)
chr1 (7-58)||(42282409-42282460)
[»] chr7 (4 HSPs)
chr7 (6-106)||(42148718-42148818)
chr7 (7-89)||(19365538-19365620)
chr7 (7-58)||(26502573-26502624)
chr7 (7-58)||(26590090-26590141)


Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 6 - 247
Target Start/End: Complemental strand, 5188958 - 5188716
Alignment:
Q  6 agttataccccacacccctacatttatatcttgaccccaacctttaacacaaagttccaattataccctttatataaaataaaattcaatcactctttca 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  5188958 agttataccccacacccctacatttatatcttgaccccaacctttaacataaagttcgaattataccctttacataaaataaaattcaatcactctttca 5188859  T
Q  106 cnnnnnnngggaaacgcacaacaaacaatacgcatta-tggaactcnnnnnnngcccaaaacgttcgatttgatttttattttgcaggcatcaacc-aaa 203  Q
    |       ||||||||||||||||||||||||||||| ||||||||       ||||||||||||||||||||||||||||||||||||||||||| |||    
T  5188858 ctttttttgggaaacgcacaacaaacaatacgcattactggaactc-ttttttgcccaaaacgttcgatttgatttttattttgcaggcatcaaccaaaa 5188760  T
Q  204 tgttattgttaatcgtttctccatatgattgtgtttcttctctc 247  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  5188759 tgttattgttaatcgtttctccatatgattgtgtttgttctctc 5188716  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 84
Target Start/End: Complemental strand, 40606989 - 40606911
Alignment:
Q  6 agttataccccacacccctacatttatatcttgaccccaacctttaacacaaagttccaattataccctttatataaaa 84  Q
    ||||||||||||||||||| |||||||| ||| |||||||| ||| ||||||| | |||| | ||||||||||||||||    
T  40606989 agttataccccacacccctgcatttataccttcaccccaacatttgacacaaactaccaaatttaccctttatataaaa 40606911  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 89
Target Start/End: Original strand, 24127946 - 24128029
Alignment:
Q  6 agttataccccacacccctacatttatatcttgaccccaacctttaacacaaagttccaattataccctttatataaaataaaa 89  Q
    |||||||||||| ||||||||||||||| ||| |||||||| ||| ||||||| |||||| | || | ||||||||||| ||||    
T  24127946 agttataccccatacccctacatttataccttcaccccaacattttacacaaacttccaaatttatcttttatataaaacaaaa 24128029  T

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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 6 - 106
Target Start/End: Original strand, 54718333 - 54718433
Alignment:
Q  6 agttataccccacacccctacatttatatcttgaccccaacctttaacacaaagttccaattataccctttatataaaataaaattcaatcactctttca 105  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||| | ||| ||||||||||||||||||||||||| |||||||    
T  54718333 agttataccccacacccctacatttataccttgaccccaacatttaacataaagttccaaatttactctttatataaaataaaattcaatcattctttca 54718432  T
Q  106 c 106  Q
    |    
T  54718433 c 54718433  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 162 - 247
Target Start/End: Original strand, 54718499 - 54718585
Alignment:
Q  162 aaaacgttcgatttgatttttattttgcaggcatcaacc-aaatgttattgttaatcgtttctccatatgattgtgtttcttctctc 247  Q
    |||| |||| ||||||||||| |||| ||| |||||||  |||||||||||||||||||||||| |||||||||||||| |||||||    
T  54718499 aaaatgttcaatttgatttttcttttacagtcatcaactgaaatgttattgttaatcgtttctctatatgattgtgtttgttctctc 54718585  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 33461231 - 33461313
Alignment:
Q  7 gttataccccacacccctacatttatatcttgaccccaacctttaacacaaagt-tccaattataccctttatataaaataaaa 89  Q
    ||||||||||||||||||||||||||| ||| |||||||| ||| ||||||| | ||||||| |||||| ||||||||| ||||    
T  33461231 gttataccccacacccctacatttatacctttaccccaacatttgacacaaactatccaatt-taccctctatataaaacaaaa 33461313  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 33573585 - 33573667
Alignment:
Q  7 gttataccccacacccctacatttatatcttgaccccaacctttaacacaaagttccaattataccctttatataaaataaaa 89  Q
    ||||||||| ||||||||||||||||| ||| |||||||| ||||||||||| | | ||   |||||||||||||||| ||||    
T  33573585 gttataccctacacccctacatttatacctttaccccaacatttaacacaaactacaaaaattaccctttatataaaacaaaa 33573667  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 89
Target Start/End: Complemental strand, 35585448 - 35585365
Alignment:
Q  6 agttataccccacacccctacatttatatcttgaccccaacctttaacacaaagttccaattataccctttatataaaataaaa 89  Q
    |||||||||||| ||||||||  ||||| ||| |||||||| ||| | ||||| | |||||| ||||||||||| |||||||||    
T  35585448 agttataccccatacccctactattataccttcaccccaacattttaaacaaactaccaattttaccctttataaaaaataaaa 35585365  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 11433783 - 11433731
Alignment:
Q  6 agttataccccacacccctacatttatatcttgaccccaacctttaacacaaa 58  Q
    |||||||||||||| |||||||||||||  || |||||||| |||||||||||    
T  11433783 agttataccccacaaccctacatttatactttcaccccaacatttaacacaaa 11433731  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 45
Target Start/End: Original strand, 5834723 - 5834762
Alignment:
Q  6 agttataccccacacccctacatttatatcttgaccccaa 45  Q
    |||| ||||||||||||||||||||||| |||||||||||    
T  5834723 agttttaccccacacccctacatttataccttgaccccaa 5834762  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 103
Target Start/End: Complemental strand, 6876628 - 6876531
Alignment:
Q  6 agttataccccacacccctacatttatatcttgaccccaacctttaacacaaagttccaattataccctttatataaaataaaattcaatcactcttt 103  Q
    |||||||||| |||||||| |||||||| ||||| ||| || ||||||||||| |  ||| | |||| ||| | ||||||||||  ||||||| ||||    
T  6876628 agttatacccaacacccctgcatttataccttgatcccgacatttaacacaaactatcaaatttaccatttttgtaaaataaaacacaatcacacttt 6876531  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 89
Target Start/End: Original strand, 32319302 - 32319386
Alignment:
Q  6 agttataccccacacccctacatttatatcttgacccc-aacctttaacacaaagttccaattataccctttatataaaataaaa 89  Q
    ||||||||||||||| |||||  ||||| ||| ||||| ||| ||| ||||||| | |||| | || ||||||||||||||||||    
T  32319302 agttataccccacactcctactattataccttaacccccaacattttacacaaactaccaaatttatcctttatataaaataaaa 32319386  T

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Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 106
Target Start/End: Original strand, 3810692 - 3810793
Alignment:
Q  6 agttataccccacacccctacatttatatcttgaccccaacctttaacacaaagttccaattataccc-tttatataaaataaaattcaatcactctttc 104  Q
    |||||||||||||||||||||||||||| |||||||||||| ||| ||||||||| |||| | ||||| |||||||||||||||| ||||||||||||||    
T  3810692 agttataccccacacccctacatttataccttgaccccaacatttgacacaaagtaccaaatttacccttttatataaaataaaactcaatcactctttc 3810791  T
Q  105 ac 106  Q
    ||    
T  3810792 ac 3810793  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 106
Target Start/End: Complemental strand, 33473958 - 33473857
Alignment:
Q  6 agttataccccacacccctacatttatatcttgaccccaacctttaacacaaagttccaattatacccttt-atataaaataaaattcaatcactctttc 104  Q
    ||||||| |||||| |||||||||||||  |||||| |||| ||| |||||| || |||| | |||| ||| |||||||| |||| ||||||||||||||    
T  33473958 agttatatcccacatccctacatttatactttgacctcaacatttgacacaatgtaccaaatttacctttttatataaaagaaaactcaatcactctttc 33473859  T
Q  105 ac 106  Q
    ||    
T  33473858 ac 33473857  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 31030462 - 31030375
Alignment:
Q  19 acccctacatttatatcttgaccccaacctttaacacaaa-gttccaattataccctttatataaaataaaattcaatcactctttca 105  Q
    |||||||||| |||| | | |||||||| ||| ||| ||| || |||| | |||| |||||||||||||||| |||||||||||||||    
T  31030462 acccctacatatataccctcaccccaacatttgacataaaagtaccaaatttaccttttatataaaataaaactcaatcactctttca 31030375  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 44255806 - 44255712
Alignment:
Q  12 accccacacccctacatttatatcttgaccccaacctttaacacaaagttccaattataccctttatataaaataaaattcaatcactctttcac 106  Q
    |||||||||||||||||||||||||| ||| |||  |||||||||||||||||||| | |||||||||||||||||||| |||| ||||||||||    
T  44255806 accccacacccctacatttatatcttcacctcaatatttaacacaaagttccaattttgccctttatataaaataaaatacaataactctttcac 44255712  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 89
Target Start/End: Original strand, 44253884 - 44253967
Alignment:
Q  6 agttataccccacacccctacatttatatcttgaccccaacctttaacacaaagttccaattataccctttatataaaataaaa 89  Q
    ||||||||||||||||| || ||||||| ||| |||||||| ||||||||||||||  |||| |||||||||||||||||||||    
T  44253884 agttataccccacacccatatatttataccttcaccccaacatttaacacaaagttttaattttaccctttatataaaataaaa 44253967  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 106
Target Start/End: Original strand, 14272914 - 14273013
Alignment:
Q  6 agttataccccacacccctacatttatatcttgaccccaacctttaacacaaagttccaattataccctttatataaaataaaattcaatcactctttca 105  Q
    |||| ||||||||||||||||| ||||| ||||| |||||| ||| || |||| | || | | ||||||||||||||||||||| ||| | ||| |||||    
T  14272914 agttttaccccacacccctacagttata-cttgatcccaacatttcactcaaactacctaatttaccctttatataaaataaaactcagttactttttca 14273012  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 54734625 - 54734703
Alignment:
Q  6 agttataccccacacccctacatttatatcttgaccccaacctttaacacaaagttccaattataccctttatataaaa 84  Q
    |||||||||||| ||||||||| ||||| ||| |||| ||| ||  ||||||| | |||| | ||||||||||||||||    
T  54734625 agttataccccatacccctacaattataccttcaccctaacattagacacaaactaccaaatttaccctttatataaaa 54734703  T

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Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 6 - 106
Target Start/End: Complemental strand, 32055272 - 32055172
Alignment:
Q  6 agttataccccacacccctacatttatatcttgaccccaacctttaacacaaagttccaattataccctttatataaaataaaattcaatcactctttca 105  Q
    ||||||||||| || ||||| ||||||| |||||||| ||| |||||||||||||| ||| | ||||||||||||||||||| | |||||||||||||||    
T  32055272 agttataccccgcaaccctatatttataccttgaccctaacatttaacacaaagtttcaaatttaccctttatataaaataatactcaatcactctttca 32055173  T
Q  106 c 106  Q
    |    
T  32055172 c 32055172  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 247
Target Start/End: Complemental strand, 32055068 - 32054982
Alignment:
Q  162 aaaacgttcgatttgatttttattttgcaggcatcaaccaaa-tgttattgttaatcgtttctccatatgattgtgtttcttctctc 247  Q
    ||||||||| ||||||||||| |||| ||  ||||||||||| | |||||||||||| |||||| ||||| |||||||| |||||||    
T  32055068 aaaacgttcaatttgatttttcttttacaaccatcaaccaaaatattattgttaatcatttctctatatggttgtgtttattctctc 32054982  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 106
Target Start/End: Complemental strand, 40371807 - 40371706
Alignment:
Q  6 agttataccccacacccctacatttatatcttgaccccaacctttaacacaaagttccaattataccc-tttatataaaataaaattcaatcactctttc 104  Q
    ||||||||||||||||||||||||||||  |||||| | |  ||| ||| |||||  ||| | ||||| |||| ||||||||||| ||||||||||||||    
T  40371807 agttataccccacacccctacatttatacattgacctcgatatttgacataaagtatcaaatttacccttttacataaaataaaactcaatcactctttc 40371708  T
Q  105 ac 106  Q
    ||    
T  40371707 ac 40371706  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 9396847 - 9396788
Alignment:
Q  163 aaacgttcgatttgatttttattttgcaggcatcaacc-aaatgttattgttaatcgtttct 223  Q
    |||| |||||||||||||  ||||| |||||||||||| |||||||||||||||||||||||    
T  9396847 aaacattcgatttgattt--attttacaggcatcaaccgaaatgttattgttaatcgtttct 9396788  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 42282460 - 42282409
Alignment:
Q  7 gttataccccacacccctacatttatatcttgaccccaacctttaacacaaa 58  Q
    ||||||||| ||||||||||||||||| ||  |||||||| |||||||||||    
T  42282460 gttataccctacacccctacatttatacctataccccaacatttaacacaaa 42282409  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 106
Target Start/End: Original strand, 42148718 - 42148818
Alignment:
Q  6 agttataccccacacccctacatttatatcttgaccccaacctttaacacaaagttccaattataccctttatataaaataaaattcaatcactctttca 105  Q
    ||||||||  || |||||||||||||||  ||||||||||| ||| ||||||||| |||| | ||||||||||||||||||||| | |||||||||||||    
T  42148718 agttatacttcatacccctacatttatacgttgaccccaacatttgacacaaagtaccaaatttaccctttatataaaataaaacttaatcactctttca 42148817  T
Q  106 c 106  Q
    |    
T  42148818 c 42148818  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 19365538 - 19365620
Alignment:
Q  7 gttataccccacacccctacatttatatcttgaccccaacctttaacacaaagttccaattataccctttatataaaataaaa 89  Q
    ||||||||||| ||||||||||||||| ||| |||||||| ||||||| ||| | ||||   |||||||||||||||| ||||    
T  19365538 gttataccccagacccctacatttatacctttaccccaacatttaacataaaataccaaaattaccctttatataaaacaaaa 19365620  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 26502573 - 26502624
Alignment:
Q  7 gttataccccacacccctacatttatatcttgaccccaacctttaacacaaa 58  Q
    ||||||||||||||||||||||||||| ||| |||||||| ||| |||||||    
T  26502573 gttataccccacacccctacatttatacctttaccccaacatttgacacaaa 26502624  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 26590141 - 26590090
Alignment:
Q  7 gttataccccacacccctacatttatatcttgaccccaacctttaacacaaa 58  Q
    ||||||||||||||||||||||||||| ||| |||||||| ||| |||||||    
T  26590141 gttataccccacacccctacatttatacctttaccccaacatttgacacaaa 26590090  T

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