View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16011_low_3 (Length: 588)
Name: NF16011_low_3
Description: NF16011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16011_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 9 - 571
Target Start/End: Original strand, 39469407 - 39469969
Alignment:
| Q |
9 |
gagatgaacacattgataggcttgatggaattggaccagagaaagcattgttgaaaagtattagcttggtaagattgcccttgctgcaaagagtttctgg |
108 |
Q |
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| T |
39469407 |
gagaagaacacattgataggcttgatggaattggaccagagaaagcattgttgaaaagtattagcttggtaagattgcccttgctgcaaagagtttctgg |
39469506 |
T |
|
| Q |
109 |
aatctctccagagagtgaattggatgatacatccaaccattgcaatggtgaattcttgccgaggttactaggcaatggacctgataatgaattgttccat |
208 |
Q |
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| T |
39469507 |
aatctctccagagagtgaattggatgatacatccaaccattgcaatggtgaattctcgccgaggttactaggcaatggacctgataatgaattgttccat |
39469606 |
T |
|
| Q |
209 |
agctcaaaaacctccaattgaggcaaatttccaagtccagaaggaacaaaaccagataactggtttcccatgaagttcagaagcttcaaattcttcagaa |
308 |
Q |
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| T |
39469607 |
agctcaaaaacctccaattgaggcaaatttccaagtccagaaggaacaaaaccagataactggtttcccatgaagttcagaagcttcaaattcttcagaa |
39469706 |
T |
|
| Q |
309 |
gactcatttcatctggaatttttcctgacaaattgttatcagaaagatctaaaaactgcaaagaagtaatgttaccaatttgtgatggaattcttccttc |
408 |
Q |
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| T |
39469707 |
gactcatttcatctggaatttttcctgacaaattgttatcagaaagatctaaaaactgcaaagaagtaatgttaccaatttgtgaaggaattcttccttc |
39469806 |
T |
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| Q |
409 |
aagattgttgttgtataagaaaagtgtatccaataacttgagatttcctaattcttctggaatctcaccaccaagatttgctactgctaaatcaagatac |
508 |
Q |
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| T |
39469807 |
aagattgttgttgtataagaaaagtgtatccaataacttgagatttcctaattcctctggaatctcaccaccaagatttgctactgctaaatcaagatac |
39469906 |
T |
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| Q |
509 |
ttaagactagtgagatttccaaattctgctggaatctcaccttcgaattcgttatatccaaga |
571 |
Q |
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| T |
39469907 |
ttaagactagtgagatttccaaattctgctggaatctcaccttcgaattcgttatatccaaga |
39469969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 160; Significance: 6e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 23 - 510
Target Start/End: Complemental strand, 30088530 - 30088043
Alignment:
| Q |
23 |
gataggcttgatggaattggaccagagaaagcattgttgaaaagtattagcttggtaagattgcccttgctgcaaagagtttctggaatctctccagaga |
122 |
Q |
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| T |
30088530 |
gataggcttgttggaatcggacccttgaaggcattgttgaaaagtataagcttggtgagatttcccttagtgcaaagagtttcaggaatctcgccggaga |
30088431 |
T |
|
| Q |
123 |
gtgaattggatgatacatccaaccattgcaatggtgaattcttgccgaggttactaggcaatggacctgataatgaattgttccatagctcaaaaacctc |
222 |
Q |
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| T |
30088430 |
gtgaattggacgatacatccaaccactgcagcggcgaattcttgccgaggtctctaggcaatggccctgacaaagaattgttccatagctcaagcacctc |
30088331 |
T |
|
| Q |
223 |
caattgaggcaaatttccaagtccagaaggaacaaaaccagataactggtttcccatgaagttcagaagcttcaaattcttcagaagactcatttcatct |
322 |
Q |
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| T |
30088330 |
tagttgaggcaaatctccaaggccagaaggtacaggaccagatagcttgttcctcataaagttcagaagctgcaaattctttagctgacttatttcagct |
30088231 |
T |
|
| Q |
323 |
ggaatttttcctgacaaattgttatcagaaagatctaaaaactgcaaagaagtaatgttaccaatttgtgatggaattcttccttcaagattgttgttgt |
422 |
Q |
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||||| |||||||| || |||| || || ||||| | | | ||| ||||| ||||| ||||| | || |||||| | ||||||| | |||| |||| |
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| T |
30088230 |
ggaatatttcctgataacatgttgtctgagagatcaagcagcaccaatgaagtcatgtttccaatatttgttggaatcttgccttcaaaactgttcttgt |
30088131 |
T |
|
| Q |
423 |
ataagaaaagtgtatccaataacttgagatttcctaattcttctggaatctcaccaccaagatttgctactgctaaatcaagatactt |
510 |
Q |
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| T |
30088130 |
ataagaaaactgtgttcaataacttgagttttcccaactcatcaggaatttcaccaccaacattgccttctgctaaatcaagatactt |
30088043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 44261990 - 44262096
Alignment:
| Q |
15 |
aacacattgataggcttgatggaattggaccagagaaagcattgttgaaaagtattagcttggtaagattgcccttgctgcaaagagtttctggaatctc |
114 |
Q |
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||||||||| ||| ||||||||||||||||||||||||||| | ||||||||||| | | || ||||| || | ||||| |||||||||| |||||| |
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| T |
44261990 |
aacacattggtagtcttgatggaattggaccagagaaagcaatattgaaaagtatcaatgttgtgagatttccttggctgccaagagtttctttaatctc |
44262089 |
T |
|
| Q |
115 |
tccagag |
121 |
Q |
| |
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||||||| |
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| T |
44262090 |
tccagag |
44262096 |
T |
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