View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16011_low_30 (Length: 238)

Name: NF16011_low_30
Description: NF16011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16011_low_30
NF16011_low_30
[»] chr1 (8 HSPs)
chr1 (1-221)||(51772537-51772757)
chr1 (148-220)||(51808238-51808310)
chr1 (136-221)||(51804277-51804362)
chr1 (1-48)||(51804159-51804206)
chr1 (177-219)||(51768085-51768127)
chr1 (166-220)||(51780538-51780592)
chr1 (5-46)||(51780397-51780438)
chr1 (1-49)||(51808112-51808160)
[»] scaffold0710 (2 HSPs)
scaffold0710 (166-220)||(7182-7236)
scaffold0710 (5-46)||(7041-7082)
[»] chr8 (1 HSPs)
chr8 (136-195)||(32908232-32908291)


Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 51772537 - 51772757
Alignment:
Q  1 tctttaatcagaaaggtcaaatgcgtaggatccgctataaggtaagtcccagattaatatacacaaacctattcatatctctcggtttctttaaatcaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  51772537 tctttaatcagaaaggtcaaatgcgtaggatccgctataaggtaagtcccagattaatatacacaaacctattcatatctctcggtttctctaaatcaag 51772636  T
Q  101 attttttaaaattcttaatggtatgtatatgtctcatgtacaggttaccattccactaaagaacatcaagtgtgtgaatcaaagtcaaaatgttgagaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51772637 attttttaaaattcttaatggtatgtatatgtctcatgtacaggttaccattccactaaagaacatcaagtgtgtgaatcaaagtcaaaatgttgagaag 51772736  T
Q  201 ccaacacaaaagtacataaac 221  Q
    |||||||||||||||||||||    
T  51772737 ccaacacaaaagtacataaac 51772757  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 51808238 - 51808310
Alignment:
Q  148 ccattccactaaagaacatcaagtgtgtgaatcaaagtcaaaatgttgagaagccaacacaaaagtacataaa 220  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51808238 ccattccactgaagaatatcaagtgtgtgaatcaaagtcaaaatgttgagaagccaacacaaaagtacataaa 51808310  T

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Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 51804277 - 51804362
Alignment:
Q  136 atgtacaggttaccattccactaaagaacatcaagtgtgtgaatcaaagtcaaaatgttgagaagccaacacaaaagtacataaac 221  Q
    |||| |||||| |||||||||| ||||| |||||||||||||  || |||||||||||||||||||||||||||||||||||||||    
T  51804277 atgttcaggttgccattccactgaagaagatcaagtgtgtgaggcagagtcaaaatgttgagaagccaacacaaaagtacataaac 51804362  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 51804159 - 51804206
Alignment:
Q  1 tctttaatcagaaaggtcaaatgcgtaggatccgctataaggtaagtc 48  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  51804159 tcttcaatcagaaaggtcaaatgcgtaggatccgctataaggtaagtc 51804206  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 51768085 - 51768127
Alignment:
Q  177 aatcaaagtcaaaatgttgagaagccaacacaaaagtacataa 219  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  51768085 aatcaaagtcaaaatgttgagaagccaacacaaaaggacataa 51768127  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 51780538 - 51780592
Alignment:
Q  166 tcaagtgtgtgaatcaaagtcaaaatgttgagaagccaacacaaaagtacataaa 220  Q
    ||||||||||||  |||||||||||||||||||||||||| || |||||||||||    
T  51780538 tcaagtgtgtgaggcaaagtcaaaatgttgagaagccaacgcagaagtacataaa 51780592  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 51780397 - 51780438
Alignment:
Q  5 taatcagaaaggtcaaatgcgtaggatccgctataaggtaag 46  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  51780397 taatcagaaaggtcaaatgtgtaggatccgctataaggtaag 51780438  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 51808112 - 51808160
Alignment:
Q  1 tctttaatcagaaaggtcaaatgcgtaggatccgctataaggtaagtcc 49  Q
    |||| ||||||||||||||||||||||||||||| ||||||||| ||||    
T  51808112 tcttcaatcagaaaggtcaaatgcgtaggatccgatataaggtatgtcc 51808160  T

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Target: scaffold0710 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0710
Description:

Target: scaffold0710; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 7182 - 7236
Alignment:
Q  166 tcaagtgtgtgaatcaaagtcaaaatgttgagaagccaacacaaaagtacataaa 220  Q
    ||||||||||||  |||||||||||||||||||||||||| || |||||||||||    
T  7182 tcaagtgtgtgaggcaaagtcaaaatgttgagaagccaacgcagaagtacataaa 7236  T

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Target: scaffold0710; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 7041 - 7082
Alignment:
Q  5 taatcagaaaggtcaaatgcgtaggatccgctataaggtaag 46  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  7041 taatcagaaaggtcaaatgtgtaggatccgctataaggtaag 7082  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 32908291 - 32908232
Alignment:
Q  136 atgtacaggttaccattccactaaagaacatcaagtgtgtgaatcaaagtcaaaatgttg 195  Q
    ||||||| |||  |||| |||| ||||| |||||||||||||||||||||||||||||||    
T  32908291 atgtacatgttgtcattacacttaagaagatcaagtgtgtgaatcaaagtcaaaatgttg 32908232  T

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