View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16011_low_31 (Length: 237)

Name: NF16011_low_31
Description: NF16011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16011_low_31
NF16011_low_31
[»] chr3 (3 HSPs)
chr3 (1-237)||(3765049-3765285)
chr3 (180-226)||(47643840-47643886)
chr3 (53-111)||(34911722-34911780)
[»] chr2 (2 HSPs)
chr2 (177-233)||(44814813-44814869)
chr2 (71-105)||(33063863-33063897)
[»] chr4 (4 HSPs)
chr4 (177-236)||(38787606-38787665)
chr4 (177-232)||(2747014-2747068)
chr4 (118-172)||(2981361-2981416)
chr4 (121-165)||(50872319-50872363)
[»] chr1 (2 HSPs)
chr1 (178-235)||(48728007-48728064)
chr1 (177-232)||(32719652-32719706)
[»] chr5 (1 HSPs)
chr5 (54-102)||(38798548-38798596)
[»] chr7 (1 HSPs)
chr7 (198-234)||(15311011-15311047)


Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 3765049 - 3765285
Alignment:
Q  1 gagaagtagaacgaaacagatagatgcatgcaaattacagttcaatctaatgatactccatccatctcagattaagtgtcacatttggaatatttgtttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3765049 gagaagtagaacgaaacagatagatgcatgcaaattacagttcaatctaatgatactccatccatctcatattaagtgtcacatttggaatatttgtttg 3765148  T
Q  101 tctcaaattatgtcattttaattacctttttccactaatatatcattttttattgtatctcaactacctaacactcacccaagagcacttgaatgagatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3765149 tctcaaattatgtcattttaattacctttttccactaatatatcattttttattgtatctcaactacctaacactcacccaagagcacttgaatgagatg 3765248  T
Q  201 gtaagggatctcttccagcttaaccagaggtcctggg 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  3765249 gtaagggatctcttccagcttaaccagaggtcctggg 3765285  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 47643840 - 47643886
Alignment:
Q  180 caagagcacttgaatgagatggtaagggatctcttccagcttaacca 226  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  47643840 caagagcacttgaatgagatggtaagagatctcttccagcttaacca 47643886  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 111
Target Start/End: Original strand, 34911722 - 34911780
Alignment:
Q  53 atactccatccatctcagattaagtgtcacatttggaatatttgtttgtctcaaattat 111  Q
    ||||||| ||||||||| |||| ||||||||| | |||||||||||||||||| |||||    
T  34911722 atactccctccatctcatattatgtgtcacatgtagaatatttgtttgtctcatattat 34911780  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 44814813 - 44814869
Alignment:
Q  177 acccaagagcacttgaatgagatggtaagggatctcttccagcttaaccagaggtcc 233  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44814813 acccaagagcacttggatgagatggtaagggatctcttccagcttaaccagaggtcc 44814869  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 105
Target Start/End: Original strand, 33063863 - 33063897
Alignment:
Q  71 attaagtgtcacatttggaatatttgtttgtctca 105  Q
    ||||||||||||||||| |||||||||||||||||    
T  33063863 attaagtgtcacatttgtaatatttgtttgtctca 33063897  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 236
Target Start/End: Original strand, 38787606 - 38787665
Alignment:
Q  177 acccaagagcacttgaatgagatggtaagggatctcttccagcttaaccagaggtcctgg 236  Q
    |||||| |||||||| ||||||||||||||||||||||| ||| ||||||||||||||||    
T  38787606 acccaaaagcacttgcatgagatggtaagggatctcttctagcataaccagaggtcctgg 38787665  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 2747014 - 2747068
Alignment:
Q  177 acccaagagcacttgaatgagatggtaagggatctcttccagcttaaccagaggtc 232  Q
    ||||||||||||||| |||| ||||||||||||| ||||||  |||||||||||||    
T  2747014 acccaagagcacttggatgacatggtaagggatc-cttccaatttaaccagaggtc 2747068  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 2981361 - 2981416
Alignment:
Q  118 ttaattacctttttccactaatatatcattttttattgtatctcaac-tacctaac 172  Q
    |||||||| |||||||||||||||| | || |||||||||||||||| ||||||||    
T  2981361 ttaattacttttttccactaatatacccttatttattgtatctcaacatacctaac 2981416  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 50872363 - 50872319
Alignment:
Q  121 attacctttttccactaatatatcattttttattgtatctcaact 165  Q
    |||| ||||||||||||||||| | || |||||||||||||||||    
T  50872363 attatctttttccactaatatacccttatttattgtatctcaact 50872319  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 48728007 - 48728064
Alignment:
Q  178 cccaagagcacttgaatgagatggtaagggatctcttccagcttaaccagaggtcctg 235  Q
    ||||||||||| || |||||||||||||||||||||||| |  ||||| |||||||||    
T  48728007 cccaagagcacatggatgagatggtaagggatctcttccggtataaccggaggtcctg 48728064  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 232
Target Start/End: Complemental strand, 32719706 - 32719652
Alignment:
Q  177 acccaagagcacttgaatgagatggtaagggatctcttccagcttaaccagaggtc 232  Q
    ||||||||||||||| || |||||||||||| ||| ||||| ||||||||||||||    
T  32719706 acccaagagcacttggataagatggtaaggg-tctgttccaacttaaccagaggtc 32719652  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 38798596 - 38798548
Alignment:
Q  54 tactccatccatctcagattaagtgtcacatttggaatatttgtttgtc 102  Q
    |||||||||||||||| | ||||||||||||||| ||||||| ||||||    
T  38798596 tactccatccatctcatactaagtgtcacatttgaaatatttatttgtc 38798548  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 15311047 - 15311011
Alignment:
Q  198 atggtaagggatctcttccagcttaaccagaggtcct 234  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  15311047 atggtaaggggtctattccagcttaaccagaggtcct 15311011  T

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