View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16011_low_33 (Length: 236)
Name: NF16011_low_33
Description: NF16011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16011_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 5829544 - 5829766
Alignment:
| Q |
1 |
ctgttcacactcactctatctagagcctcttgaactatacgctctgactcagcatcaagtgcacttgtcgcctcatcaagcaaaagtattttggggtttt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5829544 |
ctgttcacactcactctatctagagcctcttgaactatacgctctgactcagcatcaagtgcacttgtcgcctcatcaagcaaaagtattttggggtttt |
5829643 |
T |
|
| Q |
101 |
ttagcatggctcttgcaatagcaatgcgctgcttctgtcctccggacagttgtgtgcctctttctccaacagaggtgtcatatccatctggaagattact |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5829644 |
ttagcatggttcttgcaatagcaatgcgctgcttctgtcctccggacagttgcgtgcctctttctccaacagacgtgtcatatccatctggaagattact |
5829743 |
T |
|
| Q |
201 |
tatgaagctgtgtgcatttgctg |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
5829744 |
tatgaagctgtgtgcatttgctg |
5829766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 5768904 - 5768682
Alignment:
| Q |
1 |
ctgttcacactcactctatctagagcctcttgaactatacgctctgactcagcatcaagtgcacttgtcgcctcatcaagcaaaagtattttggggtttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5768904 |
ctgttcacactcactctatctagagcctcttgaactatacgctctgactcagcatcaagtgcacttgtcgcctcgtcaagcaaaagtattttggggtttt |
5768805 |
T |
|
| Q |
101 |
ttagcatggctcttgcaatagcaatgcgctgcttctgtcctccggacagttgtgtgcctctttctccaacagaggtgtcatatccatctggaagattact |
200 |
Q |
| |
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| ||||||||||||||||||||||| ||||||||||||||||| || || |||||||||||||| || |||||||||||||| |||| ||||||| || |
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| T |
5768804 |
tcagcatggctcttgcaatagcaatacgctgcttctgtcctcctgatagctgtgtgcctctttccccgacagaggtgtcataaccatttggaagagagct |
5768705 |
T |
|
| Q |
201 |
tatgaagctgtgtgcatttgctg |
223 |
Q |
| |
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|||||| |||||||||| |||| |
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| T |
5768704 |
tatgaaattgtgtgcattggctg |
5768682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 5827357 - 5827135
Alignment:
| Q |
1 |
ctgttcacactcactctatctagagcctcttgaactatacgctctgactcagcatcaagtgcacttgtcgcctcatcaagcaaaagtattttggggtttt |
100 |
Q |
| |
|
||||| ||||| |||||||||| |||||||||||||| ||| |||||||||||||| |||||||| || ||||||||||| ||||||||| | ||||||| |
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| T |
5827357 |
ctgttaacactgactctatctaaagcctcttgaactacacgttctgactcagcatcgagtgcactggttgcctcatcaagtaaaagtattctagggtttt |
5827258 |
T |
|
| Q |
101 |
ttagcatggctcttgcaatagcaatgcgctgcttctgtcctccggacagttgtgtgcctctttctccaacagaggtgtcatatccatctggaagattact |
200 |
Q |
| |
|
| | || ||||||||||| || || || || || ||||| || || | |||||||||||||| || || || || | || ||| |||||||| || |
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| T |
5827257 |
tcaatatagctcttgcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcgcctaccgaagtattgtaaccacctggaagagagct |
5827158 |
T |
|
| Q |
201 |
tatgaagctgtgtgcatttgctg |
223 |
Q |
| |
|
||||||| |||||||||| |||| |
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| T |
5827157 |
tatgaagttgtgtgcattggctg |
5827135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 5794949 - 5794860
Alignment:
| Q |
1 |
ctgttcacactcactctatctagagcctcttgaactatacgctctgactcagcatcaagtgcacttgtcgcctcatcaagcaaaagtatt |
90 |
Q |
| |
|
||||| ||||| |||||||||| |||||||||||||| | | |||||||||||||| |||||||| || ||||||||||| ||||||||| |
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| T |
5794949 |
ctgttaacactgactctatctaaagcctcttgaactacatgttctgactcagcatcgagtgcactggttgcctcatcaagtaaaagtatt |
5794860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 29327058 - 29327280
Alignment:
| Q |
1 |
ctgttcacactcactctatctagagcctcttgaactatacgctctgactcagcatcaagtgcacttgtcgcctcatcaagcaaaagtattttggggtttt |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
29327058 |
ctgttcaaactcactctatctagagcctcttgaactatacgctctgactcggcatcaagtgcacttgttgcctcatcaagcaaaagtattttagggtttt |
29327157 |
T |
|
| Q |
101 |
ttagcatggctcttgcaatagcaatgcgctgcttctgtcctccggacagttgtgtgcctctttctccaacagaggtgtcatatccatctggaagattact |
200 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| ||||| |||||| ||| |
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| T |
29327158 |
tcagcatggctcttgcaatcgcaatgcgctgcttctgtcctccagatagttgtgtgcctctttcgccaacagaagtgtcataaccatcaggaagagaact |
29327257 |
T |
|
| Q |
201 |
tatgaagctgtgtgcatttgctg |
223 |
Q |
| |
|
||||||| |||||||||| |||| |
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|
| T |
29327258 |
tatgaagttgtgtgcattggctg |
29327280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 3426377 - 3426418
Alignment:
| Q |
49 |
tcagcatcaagtgcacttgtcgcctcatcaagcaaaagtatt |
90 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| ||||||||| |
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|
| T |
3426377 |
tcagcgtcaagtgcacttgtcgcttcatcaagtaaaagtatt |
3426418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 152
Target Start/End: Original strand, 38525287 - 38525387
Alignment:
| Q |
52 |
gcatcaagtgcacttgtcgcctcatcaagcaaaagtattttggggttttttagcatggctcttgcaatagcaatgcgctgcttctgtcctccggacagtt |
151 |
Q |
| |
|
||||||||||||||||| || |||||||| | || ||| | || || || || || ||||||||||| |||||||||||||||||||| || ||||||| |
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| T |
38525287 |
gcatcaagtgcacttgtagcttcatcaagaagtagaattcttggattcttaaggattgctcttgcaatcgcaatgcgctgcttctgtccaccagacagtt |
38525386 |
T |
|
| Q |
152 |
g |
152 |
Q |
| |
|
| |
|
|
| T |
38525387 |
g |
38525387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 41174385 - 41174446
Alignment:
| Q |
19 |
tctagagcctcttgaactatacgctctgactcagcatcaagtgcacttgtcgcctcatcaag |
80 |
Q |
| |
|
||||| |||||||||||| | |||||| |||||||||||||||||||| ||||| ||||| |
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|
| T |
41174385 |
tctagcgcctcttgaactgatctctctgattcagcatcaagtgcacttgttgcctcgtcaag |
41174446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 146
Target Start/End: Original strand, 29933973 - 29934073
Alignment:
| Q |
46 |
gactcagcatcaagtgcacttgtcgcctcatcaagcaaaagtattttggggttttttagcatggctcttgcaatagcaatgcgctgcttctgtcctccgg |
145 |
Q |
| |
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|||||||||||||||||||| || || ||||| || || |||||||| || || || | || ||||||||||| || | |||||||||||||| |||| |
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| T |
29933973 |
gactcagcatcaagtgcactagttgcttcatctagtaatagtattttcggattcttcaccaacgctcttgcaattgccacccgctgcttctgtcccccgg |
29934072 |
T |
|
| Q |
146 |
a |
146 |
Q |
| |
|
| |
|
|
| T |
29934073 |
a |
29934073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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