View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16011_low_36 (Length: 230)
Name: NF16011_low_36
Description: NF16011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16011_low_36 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 41844752 - 41844962
Alignment:
| Q |
20 |
catactttcttggagaagctgaactttcttaaagaaggtcaatattggtacaacaacttgctatttcaatggtgcaataacctccaaatgtataccatat |
119 |
Q |
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| T |
41844752 |
catactttcttggagaagctgaactttcttaaagaaggtcaacattggtacaacaacttgctatttcaatggtgcaataacctccaaatgtataccatat |
41844851 |
T |
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| Q |
120 |
tcctccttcatcaagtaataagcctcactataactaaaatatggttgttttctcagccttaattctagcttctcaatatgccactttttaacgaaaaatt |
219 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41844852 |
tcctccttcatcaagtaataagcctcgctatagctaaaatatggttgttttctcagccttaattctagcttctcaatatgccactttttaacggaaaatt |
41844951 |
T |
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| Q |
220 |
agtgtttaaat |
230 |
Q |
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| T |
41844952 |
agtgtttaaat |
41844962 |
T |
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